Griffin TJ - Search Results

1

Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome.

Afiuni-Zadeh S, Boylan KLM, Jagtap PD, Griffin TJ, Rudney JD, Peterson ML, Skubitz APN. Afiuni-Zadeh S, et al. Among authors: griffin tj. Sci Rep. 2018 Jul 18;8(1):10868. doi: 10.1038/s41598-018-29092-4. Sci Rep. 2018. PMID: 30022083 Free PMC article.

2

A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry.

Rudney JD, Xie H, Rhodus NL, Ondrey FG, Griffin TJ. Rudney JD, et al. Among authors: griffin tj. Mol Oral Microbiol. 2010 Feb;25(1):38-49. doi: 10.1111/j.2041-1014.2009.00558.x. Mol Oral Microbiol. 2010. PMID: 20331792 Free PMC article.

3

Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential.

Stone MD, Odland RM, McGowan T, Onsongo G, Tang C, Rhodus NL, Jagtap P, Bandhakavi S, Griffin TJ. Stone MD, et al. Among authors: griffin tj. Clin Proteomics. 2010 Sep;6(3):75-82. doi: 10.1007/s12014-010-9050-3. Epub 2010 Jul 25. Clin Proteomics. 2010. PMID: 20930922 Free PMC article.

4

Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery.

Kooren JA, Rhodus NL, Tang C, Jagtap PD, Horrigan BJ, Griffin TJ. Kooren JA, et al. Among authors: griffin tj. Clin Proteomics. 2011 Sep 13;8(1):13. doi: 10.1186/1559-0275-8-13. Clin Proteomics. 2011. PMID: 21914210 Free PMC article.

5

Deep metaproteomic analysis of human salivary supernatant.

Jagtap P, McGowan T, Bandhakavi S, Tu ZJ, Seymour S, Griffin TJ, Rudney JD. Jagtap P, et al. Among authors: griffin tj. Proteomics. 2012 Apr;12(7):992-1001. doi: 10.1002/pmic.201100503. Proteomics. 2012. PMID: 22522805 Free PMC article.

6

Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.

Jagtap P, Bandhakavi S, Higgins L, McGowan T, Sa R, Stone MD, Chilton J, Arriaga EA, Seymour SL, Griffin TJ. Jagtap P, et al. Among authors: griffin tj. Proteomics. 2012 Jun;12(11):1726-30. doi: 10.1002/pmic.201100097. Proteomics. 2012. PMID: 22623410 Free PMC article.

7

A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.

Jagtap P, Goslinga J, Kooren JA, McGowan T, Wroblewski MS, Seymour SL, Griffin TJ. Jagtap P, et al. Among authors: griffin tj. Proteomics. 2013 Apr;13(8):1352-7. doi: 10.1002/pmic.201200352. Epub 2013 Mar 15. Proteomics. 2013. PMID: 23412978 Free PMC article.

8

A feasibility study to identify proteins in the residual Pap test fluid of women with normal cytology by mass spectrometry-based proteomics.

Boylan KL, Afiuni-Zadeh S, Geller MA, Hickey K, Griffin TJ, Pambuccian SE, Skubitz AP. Boylan KL, et al. Among authors: griffin tj. Clin Proteomics. 2014 Jul 14;11(1):30. doi: 10.1186/1559-0275-11-30. eCollection 2014. Clin Proteomics. 2014. PMID: 25097468 Free PMC article.

9

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.

Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. Sheynkman GM, et al. Among authors: griffin tj. BMC Genomics. 2014 Aug 22;15(1):703. doi: 10.1186/1471-2164-15-703. BMC Genomics. 2014. PMID: 25149441 Free PMC article.

10

Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework.

Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Shenykman GM, Bandhakavi S, Smith LM, Griffin TJ. Jagtap PD, et al. Among authors: griffin tj. J Proteome Res. 2014 Dec 5;13(12):5898-908. doi: 10.1021/pr500812t. Epub 2014 Oct 23. J Proteome Res. 2014. PMID: 25301683 Free PMC article.

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