Smid M - Search Results

1

Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons.

Smid M, Coebergh van den Braak RRJ, van de Werken HJG, van Riet J, van Galen A, de Weerd V, van der Vlugt-Daane M, Bril SI, Lalmahomed ZS, Kloosterman WP, Wilting SM, Foekens JA, IJzermans JNM; MATCH study group; Martens JWM, Sieuwerts AM. Smid M, et al. BMC Bioinformatics. 2018 Jun 22;19(1):236. doi: 10.1186/s12859-018-2246-7. BMC Bioinformatics. 2018. PMID: 29929481 Free PMC article.

2

Infrequent CDKN2 (MTS1/p16) gene alterations in human primary breast cancer.

Berns EM, Klijn JG, Smid M, van Staveren IL, Gruis NA, Foekens JA. Berns EM, et al. Among authors: smid m. Br J Cancer. 1995 Oct;72(4):964-7. doi: 10.1038/bjc.1995.442. Br J Cancer. 1995. PMID: 7547249 Free PMC article.

3

TP53 and MYC gene alterations independently predict poor prognosis in breast cancer patients.

Berns EM, Klijn JG, Smid M, van Staveren IL, Look MP, van Putten WL, Foekens JA. Berns EM, et al. Among authors: smid m. Genes Chromosomes Cancer. 1996 Jul;16(3):170-9. doi: 10.1002/(SICI)1098-2264(199607)16:3<170::AID-GCC3>3.0.CO;2-W. Genes Chromosomes Cancer. 1996. PMID: 8814449

4

Mutations in residues of TP53 that directly contact DNA predict poor outcome in human primary breast cancer.

Berns EM, van Staveren IL, Look MP, Smid M, Klijn JG, Foekens JA. Berns EM, et al. Among authors: smid m. Br J Cancer. 1998 Apr;77(7):1130-6. doi: 10.1038/bjc.1998.187. Br J Cancer. 1998. PMID: 9569050 Free PMC article.

5

Venn Mapping: clustering of heterologous microarray data based on the number of co-occurring differentially expressed genes.

Smid M, Dorssers LC, Jenster G. Smid M, et al. Bioinformatics. 2003 Nov 1;19(16):2065-71. doi: 10.1093/bioinformatics/btg282. Bioinformatics. 2003. PMID: 14594711

6

GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms.

Smid M, Dorssers LC. Smid M, et al. Bioinformatics. 2004 Nov 1;20(16):2618-25. doi: 10.1093/bioinformatics/bth293. Epub 2004 May 6. Bioinformatics. 2004. PMID: 15130934

7

Storing, linking, and mining microarray databases using SRS.

Veldhoven A, de Lange D, Smid M, de Jager V, Kors JA, Jenster G. Veldhoven A, et al. Among authors: smid m. BMC Bioinformatics. 2005 Jul 27;6:192. doi: 10.1186/1471-2105-6-192. BMC Bioinformatics. 2005. PMID: 16048644 Free PMC article.

8

Genes associated with breast cancer metastatic to bone.

Smid M, Wang Y, Klijn JG, Sieuwerts AM, Zhang Y, Atkins D, Martens JW, Foekens JA. Smid M, et al. J Clin Oncol. 2006 May 20;24(15):2261-7. doi: 10.1200/JCO.2005.03.8802. Epub 2006 Apr 24. J Clin Oncol. 2006. PMID: 16636340

9

Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer.

Yu JX, Sieuwerts AM, Zhang Y, Martens JW, Smid M, Klijn JG, Wang Y, Foekens JA. Yu JX, et al. Among authors: smid m. BMC Cancer. 2007 Sep 25;7:182. doi: 10.1186/1471-2407-7-182. BMC Cancer. 2007. PMID: 17894856 Free PMC article.

10

Urokinase receptor splice variant uPAR-del4/5-associated gene expression in breast cancer: identification of rab31 as an independent prognostic factor.

Kotzsch M, Sieuwerts AM, Grosser M, Meye A, Fuessel S, Meijer-van Gelder ME, Smid M, Schmitt M, Baretton G, Luther T, Magdolen V, Foekens JA. Kotzsch M, et al. Among authors: smid m. Breast Cancer Res Treat. 2008 Sep;111(2):229-40. doi: 10.1007/s10549-007-9782-6. Epub 2007 Oct 20. Breast Cancer Res Treat. 2008. PMID: 17952591

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