Tjaden B - Search Results

1

Small RNA profiling in Mycobacterium tuberculosis identifies MrsI as necessary for an anticipatory iron sparing response.

Gerrick ER, Barbier T, Chase MR, Xu R, François J, Lin VH, Szucs MJ, Rock JM, Ahmad R, Tjaden B, Livny J, Fortune SM. Gerrick ER, et al. Among authors: tjaden b. Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6464-6469. doi: 10.1073/pnas.1718003115. Epub 2018 Jun 5. Proc Natl Acad Sci U S A. 2018. PMID: 29871950 Free PMC article.

2

Target prediction for small, noncoding RNAs in bacteria.

Tjaden B, Goodwin SS, Opdyke JA, Guillier M, Fu DX, Gottesman S, Storz G. Tjaden B, et al. Nucleic Acids Res. 2006 May 22;34(9):2791-802. doi: 10.1093/nar/gkl356. Print 2006. Nucleic Acids Res. 2006. PMID: 16717284 Free PMC article.

3

Computational identification of sRNA targets.

Tjaden B. Tjaden B. Methods Mol Biol. 2012;905:227-34. doi: 10.1007/978-1-61779-949-5_14. Methods Mol Biol. 2012. PMID: 22736007

4

Computational analysis of bacterial RNA-Seq data.

McClure R, Balasubramanian D, Sun Y, Bobrovskyy M, Sumby P, Genco CA, Vanderpool CK, Tjaden B. McClure R, et al. Among authors: tjaden b. Nucleic Acids Res. 2013 Aug;41(14):e140. doi: 10.1093/nar/gkt444. Epub 2013 May 28. Nucleic Acids Res. 2013. PMID: 23716638 Free PMC article.

5

TargetRNA2: identifying targets of small regulatory RNAs in bacteria.

Kery MB, Feldman M, Livny J, Tjaden B. Kery MB, et al. Among authors: tjaden b. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W124-9. doi: 10.1093/nar/gku317. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753424 Free PMC article.

6

Probing the sRNA regulatory landscape of P. aeruginosa: post-transcriptional control of determinants of pathogenicity and antibiotic susceptibility.

Zhang YF, Han K, Chandler CE, Tjaden B, Ernst RK, Lory S. Zhang YF, et al. Among authors: tjaden b. Mol Microbiol. 2017 Dec;106(6):919-937. doi: 10.1111/mmi.13857. Epub 2017 Nov 2. Mol Microbiol. 2017. PMID: 28976035 Free PMC article.

7

A novel fur- and iron-regulated small RNA, NrrF, is required for indirect fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis.

Mellin JR, Goswami S, Grogan S, Tjaden B, Genco CA. Mellin JR, et al. Among authors: tjaden b. J Bacteriol. 2007 May;189(10):3686-94. doi: 10.1128/JB.01890-06. Epub 2007 Mar 9. J Bacteriol. 2007. PMID: 17351036 Free PMC article.

8

Prediction of small, noncoding RNAs in bacteria using heterogeneous data.

Tjaden B. Tjaden B. J Math Biol. 2008 Jan;56(1-2):183-200. doi: 10.1007/s00285-007-0079-5. Epub 2007 Mar 13. J Math Biol. 2008. PMID: 17354017

9

TargetRNA: a tool for predicting targets of small RNA action in bacteria.

Tjaden B. Tjaden B. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W109-13. doi: 10.1093/nar/gkn264. Epub 2008 May 13. Nucleic Acids Res. 2008. PMID: 18477632 Free PMC article.

10

De novo assembly of bacterial transcriptomes from RNA-seq data.

Tjaden B. Tjaden B. Genome Biol. 2015 Jan 13;16(1):1. doi: 10.1186/s13059-014-0572-2. Genome Biol. 2015. PMID: 25583448 Free PMC article.

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