Vijay-Shanker K - Search Results

1

DEXTER: Disease-Expression Relation Extraction from Text.

Gupta S, Dingerdissen H, Ross KE, Hu Y, Wu CH, Mazumder R, Vijay-Shanker K. Gupta S, et al. Among authors: vijay shanker k. Database (Oxford). 2018 Jan 1;2018:bay045. doi: 10.1093/database/bay045. Database (Oxford). 2018. PMID: 29860481 Free PMC article.

2

Literature mining and database annotation of protein phosphorylation using a rule-based system.

Hu ZZ, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH. Hu ZZ, et al. Bioinformatics. 2005 Jun 1;21(11):2759-65. doi: 10.1093/bioinformatics/bti390. Epub 2005 Apr 6. Bioinformatics. 2005. PMID: 15814565

3

An online literature mining tool for protein phosphorylation.

Yuan X, Hu ZZ, Wu HT, Torii M, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH. Yuan X, et al. Bioinformatics. 2006 Jul 1;22(13):1668-9. doi: 10.1093/bioinformatics/btl159. Epub 2006 Apr 27. Bioinformatics. 2006. PMID: 16644790

4

The eFIP system for text mining of protein interaction networks of phosphorylated proteins.

Tudor CO, Arighi CN, Wang Q, Wu CH, Vijay-Shanker K. Tudor CO, et al. Database (Oxford). 2012 Dec 5;2012:bas044. doi: 10.1093/database/bas044. Print 2012. Database (Oxford). 2012. PMID: 23221174 Free PMC article.

5

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.

Peng Y, Tudor CO, Torii M, Wu CH, Vijay-Shanker K. Peng Y, et al. Database (Oxford). 2014 May 21;2014:bau038. doi: 10.1093/database/bau038. Print 2014. Database (Oxford). 2014. PMID: 24850848 Free PMC article.

6

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.

Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH. Torii M, et al. Database (Oxford). 2014 Aug 13;2014:bau081. doi: 10.1093/database/bau081. Print 2014. Database (Oxford). 2014. PMID: 25122463 Free PMC article.

7

A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems.

Peng Y, Torii M, Wu CH, Vijay-Shanker K. Peng Y, et al. BMC Bioinformatics. 2014 Aug 23;15(1):285. doi: 10.1186/1471-2105-15-285. BMC Bioinformatics. 2014. PMID: 25149151 Free PMC article.

8

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.

Tudor CO, Ross KE, Li G, Vijay-Shanker K, Wu CH, Arighi CN. Tudor CO, et al. Database (Oxford). 2015 Mar 31;2015:bav020. doi: 10.1093/database/bav020. Print 2015. Database (Oxford). 2015. PMID: 25833953 Free PMC article.

9

pGenN, a gene normalization tool for plant genes and proteins in scientific literature.

Ding R, Arighi CN, Lee JY, Wu CH, Vijay-Shanker K. Ding R, et al. PLoS One. 2015 Aug 10;10(8):e0135305. doi: 10.1371/journal.pone.0135305. eCollection 2015. PLoS One. 2015. PMID: 26258475 Free PMC article.

10

RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.

Torii M, Arighi CN, Li G, Wang Q, Wu CH, Vijay-Shanker K. Torii M, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 Jan-Feb;12(1):17-29. doi: 10.1109/TCBB.2014.2372765. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357075 Free PMC article.

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