Das R - Search Results

1

Blind prediction of noncanonical RNA structure at atomic accuracy.

Watkins AM, Geniesse C, Kladwang W, Zakrevsky P, Jaeger L, Das R. Watkins AM, et al. Among authors: das r. Sci Adv. 2018 May 25;4(5):eaar5316. doi: 10.1126/sciadv.aar5316. eCollection 2018 May. Sci Adv. 2018. PMID: 29806027 Free PMC article.

2

Atomic accuracy in predicting and designing noncanonical RNA structure.

Das R, Karanicolas J, Baker D. Das R, et al. Nat Methods. 2010 Apr;7(4):291-4. doi: 10.1038/nmeth.1433. Epub 2010 Feb 28. Nat Methods. 2010. PMID: 20190761 Free PMC article.

3

A mutate-and-map strategy for inferring base pairs in structured nucleic acids: proof of concept on a DNA/RNA helix.

Kladwang W, Das R. Kladwang W, et al. Among authors: das r. Biochemistry. 2010 Sep 7;49(35):7414-6. doi: 10.1021/bi101123g. Biochemistry. 2010. PMID: 20677780

4

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA.

Kladwang W, Cordero P, Das R. Kladwang W, et al. Among authors: das r. RNA. 2011 Mar;17(3):522-34. doi: 10.1261/rna.2516311. Epub 2011 Jan 14. RNA. 2011. PMID: 21239468 Free PMC article.

5

HiTRACE: high-throughput robust analysis for capillary electrophoresis.

Yoon S, Kim J, Hum J, Kim H, Park S, Kladwang W, Das R. Yoon S, et al. Among authors: das r. Bioinformatics. 2011 Jul 1;27(13):1798-805. doi: 10.1093/bioinformatics/btr277. Epub 2011 May 10. Bioinformatics. 2011. PMID: 21561922

6

Understanding the errors of SHAPE-directed RNA structure modeling.

Kladwang W, VanLang CC, Cordero P, Das R. Kladwang W, et al. Among authors: das r. Biochemistry. 2011 Sep 20;50(37):8049-56. doi: 10.1021/bi200524n. Epub 2011 Aug 25. Biochemistry. 2011. PMID: 21842868 Free PMC article.

7

A two-dimensional mutate-and-map strategy for non-coding RNA structure.

Kladwang W, VanLang CC, Cordero P, Das R. Kladwang W, et al. Among authors: das r. Nat Chem. 2011 Oct 30;3(12):954-62. doi: 10.1038/nchem.1176. Nat Chem. 2011. PMID: 22109276 Free PMC article.

8

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling.

Sripakdeevong P, Kladwang W, Das R. Sripakdeevong P, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20573-8. doi: 10.1073/pnas.1106516108. Epub 2011 Dec 5. Proc Natl Acad Sci U S A. 2011. PMID: 22143768 Free PMC article.

9

Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches.

Kladwang W, Chou FC, Das R. Kladwang W, et al. Among authors: das r. J Am Chem Soc. 2012 Jan 25;134(3):1404-7. doi: 10.1021/ja2093508. Epub 2012 Jan 12. J Am Chem Soc. 2012. PMID: 22192063

10

Ultraviolet shadowing of RNA can cause significant chemical damage in seconds.

Kladwang W, Hum J, Das R. Kladwang W, et al. Among authors: das r. Sci Rep. 2012;2:517. doi: 10.1038/srep00517. Epub 2012 Jul 18. Sci Rep. 2012. PMID: 22816040 Free PMC article.

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