Umeyama H - Search Results

1

Ubiquitin-dependent proteolysis of CXCL7 leads to posterior longitudinal ligament ossification.

Tsuru M, Ono A, Umeyama H, Takeuchi M, Nagata K. Tsuru M, et al. Among authors: umeyama h. PLoS One. 2018 May 21;13(5):e0196204. doi: 10.1371/journal.pone.0196204. eCollection 2018. PLoS One. 2018. PMID: 29782494 Free PMC article.

2

Retrospective Proteomic Analysis of a Novel, Cancer Metastasis-Promoting RGD-Containing Peptide.

Tsuru M, Sata M, Tanaka M, Umeyama H, Kodera Y, Shiwa M, Aoyagi N, Yasuda K, Matsuoka K, Fukuda T, Yamana H, Nagata K. Tsuru M, et al. Among authors: umeyama h. Transl Oncol. 2017 Dec;10(6):998-1007. doi: 10.1016/j.tranon.2017.10.001. Epub 2017 Nov 2. Transl Oncol. 2017. PMID: 29096248 Free PMC article.

3

HUMAN FAMSD-BASE: high quality protein structure model database for the human genome using the FAMSD homology modeling method.

Kanou K, Hirata T, Iwadate M, Terashi G, Umeyama H, Takeda-Shitaka M. Kanou K, et al. Among authors: umeyama h. Chem Pharm Bull (Tokyo). 2010 Jan;58(1):66-75. doi: 10.1248/cpb.58.66. Chem Pharm Bull (Tokyo). 2010. PMID: 20045969 Free article.

4

Searching for protein-protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues.

Terashi G, Takeda-Shitaka M, Takaya D, Komatsu K, Umeyama H. Terashi G, et al. Among authors: umeyama h. Proteins. 2005 Aug 1;60(2):289-95. doi: 10.1002/prot.20572. Proteins. 2005. PMID: 15981245

5

Evaluation of homology modeling of the severe acute respiratory syndrome (SARS) coronavirus main protease for structure based drug design.

Takeda-Shitaka M, Nojima H, Takaya D, Kanou K, Iwadate M, Umeyama H. Takeda-Shitaka M, et al. Among authors: umeyama h. Chem Pharm Bull (Tokyo). 2004 May;52(5):643-5. doi: 10.1248/cpb.52.643. Chem Pharm Bull (Tokyo). 2004. PMID: 15133227 Free article.

6

Protein structure prediction in CASP6 using CHIMERA and FAMS.

Takeda-Shitaka M, Terashi G, Takaya D, Kanou K, Iwadate M, Umeyama H. Takeda-Shitaka M, et al. Among authors: umeyama h. Proteins. 2005;61 Suppl 7:122-127. doi: 10.1002/prot.20728. Proteins. 2005. PMID: 16187353

7

FAMS complex: a fully automated homology modeling system for protein complex structures.

Takeda-Shitaka M, Terashi G, Chiba C, Takaya D, Umeyama H. Takeda-Shitaka M, et al. Among authors: umeyama h. Med Chem. 2006 Mar;2(2):191-201. doi: 10.2174/157340606776056160. Med Chem. 2006. PMID: 16787367

8

Fams-ace: a combined method to select the best model after remodeling all server models.

Terashi G, Takeda-Shitaka M, Kanou K, Iwadate M, Takaya D, Hosoi A, Ohta K, Umeyama H. Terashi G, et al. Among authors: umeyama h. Proteins. 2007;69 Suppl 8:98-107. doi: 10.1002/prot.21785. Proteins. 2007. PMID: 17894329

9

FAMS and FAMSBASE for protein structure.

Umeyama H, Iwadate M. Umeyama H, et al. Curr Protoc Bioinformatics. 2004 Feb;Chapter 5:Unit5.2. doi: 10.1002/0471250953.bi0502s04. Curr Protoc Bioinformatics. 2004. PMID: 18428727

10

Dynamic interaction among the platform domain and two membrane-proximal immunoglobulin-like domains of class I major histocompatibility complex: normal mode analysis.

Nojima H, Takeda-Shitaka M, Kanou K, Kamiya K, Umeyama H. Nojima H, et al. Among authors: umeyama h. Chem Pharm Bull (Tokyo). 2008 May;56(5):635-41. doi: 10.1248/cpb.56.635. Chem Pharm Bull (Tokyo). 2008. PMID: 18451549 Free article.

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