Pe'er D - Search Results

1

Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells.

Bengsch B, Ohtani T, Khan O, Setty M, Manne S, O'Brien S, Gherardini PF, Herati RS, Huang AC, Chang KM, Newell EW, Bovenschen N, Pe'er D, Albelda SM, Wherry EJ. Bengsch B, et al. Immunity. 2018 May 15;48(5):1029-1045.e5. doi: 10.1016/j.immuni.2018.04.026. Immunity. 2018. PMID: 29768164 Free PMC article.

2

Wishbone identifies bifurcating developmental trajectories from single-cell data.

Setty M, Tadmor MD, Reich-Zeliger S, Angel O, Salame TM, Kathail P, Choi K, Bendall S, Friedman N, Pe'er D. Setty M, et al. Nat Biotechnol. 2016 Jun;34(6):637-45. doi: 10.1038/nbt.3569. Epub 2016 May 2. Nat Biotechnol. 2016. PMID: 27136076 Free PMC article.

3

Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation.

Lane K, Van Valen D, DeFelice MM, Macklin DN, Kudo T, Jaimovich A, Carr A, Meyer T, Pe'er D, Boutet SC, Covert MW. Lane K, et al. Cell Syst. 2017 Apr 26;4(4):458-469.e5. doi: 10.1016/j.cels.2017.03.010. Epub 2017 Apr 5. Cell Syst. 2017. PMID: 28396000 Free PMC article.

4

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment.

Azizi E, Carr AJ, Plitas G, Cornish AE, Konopacki C, Prabhakaran S, Nainys J, Wu K, Kiseliovas V, Setty M, Choi K, Fromme RM, Dao P, McKenney PT, Wasti RC, Kadaveru K, Mazutis L, Rudensky AY, Pe'er D. Azizi E, et al. Cell. 2018 Aug 23;174(5):1293-1308.e36. doi: 10.1016/j.cell.2018.05.060. Epub 2018 Jun 28. Cell. 2018. PMID: 29961579 Free PMC article.

5

Characterization of cell fate probabilities in single-cell data with Palantir.

Setty M, Kiseliovas V, Levine J, Gayoso A, Mazutis L, Pe'er D. Setty M, et al. Nat Biotechnol. 2019 Apr;37(4):451-460. doi: 10.1038/s41587-019-0068-4. Epub 2019 Mar 21. Nat Biotechnol. 2019. PMID: 30899105 Free PMC article.

6

Negative Co-stimulation Constrains T Cell Differentiation by Imposing Boundaries on Possible Cell States.

Wei SC, Sharma R, Anang NAS, Levine JH, Zhao Y, Mancuso JJ, Setty M, Sharma P, Wang J, Pe'er D, Allison JP. Wei SC, et al. Immunity. 2019 Apr 16;50(4):1084-1098.e10. doi: 10.1016/j.immuni.2019.03.004. Epub 2019 Mar 26. Immunity. 2019. PMID: 30926234 Free PMC article.

7

The emergent landscape of the mouse gut endoderm at single-cell resolution.

Nowotschin S, Setty M, Kuo YY, Liu V, Garg V, Sharma R, Simon CS, Saiz N, Gardner R, Boutet SC, Church DM, Hoodless PA, Hadjantonakis AK, Pe'er D. Nowotschin S, et al. Nature. 2019 May;569(7756):361-367. doi: 10.1038/s41586-019-1127-1. Epub 2019 Apr 8. Nature. 2019. PMID: 30959515 Free PMC article.

8

Natural Genetic Variation Reveals Key Features of Epigenetic and Transcriptional Memory in Virus-Specific CD8 T Cells.

van der Veeken J, Zhong Y, Sharma R, Mazutis L, Dao P, Pe'er D, Leslie CS, Rudensky AY. van der Veeken J, et al. Immunity. 2019 May 21;50(5):1202-1217.e7. doi: 10.1016/j.immuni.2019.03.031. Epub 2019 Apr 23. Immunity. 2019. PMID: 31027997 Free PMC article.

9

Author Correction: Characterization of cell fate probabilities in single-cell data with Palantir.

Setty M, Kiseliovas V, Levine J, Gayoso A, Mazutis L, Pe'er D. Setty M, et al. Nat Biotechnol. 2019 Oct;37(10):1237. doi: 10.1038/s41587-019-0282-0. Nat Biotechnol. 2019. PMID: 31534198

10

Regenerative lineages and immune-mediated pruning in lung cancer metastasis.

Laughney AM, Hu J, Campbell NR, Bakhoum SF, Setty M, Lavallée VP, Xie Y, Masilionis I, Carr AJ, Kottapalli S, Allaj V, Mattar M, Rekhtman N, Xavier JB, Mazutis L, Poirier JT, Rudin CM, Pe'er D, Massagué J. Laughney AM, et al. Nat Med. 2020 Feb;26(2):259-269. doi: 10.1038/s41591-019-0750-6. Epub 2020 Feb 10. Nat Med. 2020. PMID: 32042191 Free PMC article.

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