Takenaka Y - Search Results

1

Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells.

Takenaka Y, Mikami K, Seno S, Matsuda H. Takenaka Y, et al. BMC Bioinformatics. 2018 May 8;19(Suppl 4):89. doi: 10.1186/s12859-018-2072-y. BMC Bioinformatics. 2018. PMID: 29745848 Free PMC article.

2

Inference of S-system models of gene regulatory networks using immune algorithm.

Nakayama T, Seno S, Takenaka Y, Matsuda H. Nakayama T, et al. Among authors: takenaka y. J Bioinform Comput Biol. 2011 Dec;9 Suppl 1:75-86. doi: 10.1142/s0219720011005768. J Bioinform Comput Biol. 2011. PMID: 22144255

3

An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems.

Watanabe Y, Seno S, Takenaka Y, Matsuda H. Watanabe Y, et al. Among authors: takenaka y. BMC Genomics. 2012;13 Suppl 1(Suppl 1):S12. doi: 10.1186/1471-2164-13-S1-S12. Epub 2012 Jan 17. BMC Genomics. 2012. PMID: 22369509 Free PMC article.

4

An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles.

Araki R, Seno S, Takenaka Y, Matsuda H. Araki R, et al. Among authors: takenaka y. Gene. 2013 Apr 10;518(1):17-25. doi: 10.1016/j.gene.2012.11.090. Epub 2012 Dec 21. Gene. 2013. PMID: 23266644 Free article.

5

Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution.

Takenaka Y, Seno S, Matsuda H. Takenaka Y, et al. J Bioinform Comput Biol. 2015 Oct;13(5):1543002. doi: 10.1142/S0219720015430027. Epub 2015 Sep 30. J Bioinform Comput Biol. 2015. PMID: 26508425

6

A method for clustering gene expression data based on graph structure.

Seno S, Teramoto R, Takenaka Y, Matsuda H. Seno S, et al. Among authors: takenaka y. Genome Inform. 2004;15(2):151-60. Genome Inform. 2004. PMID: 15706501

7

A method for similarity search of genomic positional expression using CAGE.

Seno S, Takenaka Y, Kai C, Kawai J, Carninci P, Hayashizaki Y, Matsuda H. Seno S, et al. Among authors: takenaka y. PLoS Genet. 2006 Apr;2(4):e44. doi: 10.1371/journal.pgen.0020044. Epub 2006 Apr 28. PLoS Genet. 2006. PMID: 16683027 Free PMC article.

8

Tissue-specific functions based on information content of gene ontology using cap analysis gene expression.

Maekawa S, Matsumoto A, Takenaka Y, Matsuda H. Maekawa S, et al. Among authors: takenaka y. Med Biol Eng Comput. 2007 Nov;45(11):1029-36. doi: 10.1007/s11517-007-0274-y. Epub 2007 Oct 30. Med Biol Eng Comput. 2007. PMID: 17968606

9

GO based tissue specific functions of mouse using countable gene expression profiles.

Takenaka Y, Matsumoto A, Matsuda H. Takenaka Y, et al. Genome Inform. 2007;19:154-65. Genome Inform. 2007. PMID: 18546513

10

Perfect Hamming code with a hash table for faster genome mapping.

Takenaka Y, Seno S, Matsuda H. Takenaka Y, et al. BMC Genomics. 2011 Nov 30;12 Suppl 3(Suppl 3):S8. doi: 10.1186/1471-2164-12-S3-S8. Epub 2011 Nov 30. BMC Genomics. 2011. PMID: 22369457 Free PMC article.

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