Wishart DS - Search Results

1

CypReact: A Software Tool for in Silico Reactant Prediction for Human Cytochrome P450 Enzymes.

Tian S, Djoumbou-Feunang Y, Greiner R, Wishart DS. Tian S, et al. Among authors: wishart ds. J Chem Inf Model. 2018 Jun 25;58(6):1282-1291. doi: 10.1021/acs.jcim.8b00035. Epub 2018 May 18. J Chem Inf Model. 2018. PMID: 29738669

2

Predicting subcellular localization of proteins using machine-learned classifiers.

Lu Z, Szafron D, Greiner R, Lu P, Wishart DS, Poulin B, Anvik J, Macdonell C, Eisner R. Lu Z, et al. Among authors: wishart ds. Bioinformatics. 2004 Mar 1;20(4):547-56. doi: 10.1093/bioinformatics/btg447. Epub 2004 Jan 22. Bioinformatics. 2004. PMID: 14990451

3

Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations.

Szafron D, Lu P, Greiner R, Wishart DS, Poulin B, Eisner R, Lu Z, Anvik J, Macdonell C, Fyshe A, Meeuwis D. Szafron D, et al. Among authors: wishart ds. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W365-71. doi: 10.1093/nar/gkh485. Nucleic Acids Res. 2004. PMID: 15215412 Free PMC article.

4

PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization.

Lu P, Szafron D, Greiner R, Wishart DS, Fyshe A, Pearcy B, Poulin B, Eisner R, Ngo D, Lamb N. Lu P, et al. Among authors: wishart ds. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D147-53. doi: 10.1093/nar/gki120. Nucleic Acids Res. 2005. PMID: 15608166 Free PMC article.

5

Prediction of skeletal muscle and fat mass in patients with advanced cancer using a metabolomic approach.

Stretch C, Eastman T, Mandal R, Eisner R, Wishart DS, Mourtzakis M, Prado CM, Damaraju S, Ball RO, Greiner R, Baracos VE. Stretch C, et al. Among authors: wishart ds. J Nutr. 2012 Jan;142(1):14-21. doi: 10.3945/jn.111.147751. Epub 2011 Dec 7. J Nutr. 2012. PMID: 22157537 Free article.

6

Role of water in ligand binding to maltose-binding protein: insight from a new docking protocol based on the 3D-RISM-KH molecular theory of solvation.

Huang W, Blinov N, Wishart DS, Kovalenko A. Huang W, et al. Among authors: wishart ds. J Chem Inf Model. 2015 Feb 23;55(2):317-28. doi: 10.1021/ci500520q. Epub 2015 Jan 26. J Chem Inf Model. 2015. PMID: 25545470

7

Accurate, fully-automated NMR spectral profiling for metabolomics.

Ravanbakhsh S, Liu P, Bjorndahl TC, Mandal R, Grant JR, Wilson M, Eisner R, Sinelnikov I, Hu X, Luchinat C, Greiner R, Wishart DS. Ravanbakhsh S, et al. Among authors: wishart ds. PLoS One. 2015 May 27;10(5):e0124219. doi: 10.1371/journal.pone.0124219. eCollection 2015. PLoS One. 2015. PMID: 26017271 Free PMC article.

8

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy.

Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, Wishart DS. Djoumbou Feunang Y, et al. Among authors: wishart ds. J Cheminform. 2016 Nov 4;8:61. doi: 10.1186/s13321-016-0174-y. eCollection 2016. J Cheminform. 2016. PMID: 27867422 Free PMC article.

9

YMDB 2.0: a significantly expanded version of the yeast metabolome database.

Ramirez-Gaona M, Marcu A, Pon A, Guo AC, Sajed T, Wishart NA, Karu N, Djoumbou Feunang Y, Arndt D, Wishart DS. Ramirez-Gaona M, et al. Among authors: wishart na, wishart ds. Nucleic Acids Res. 2017 Jan 4;45(D1):D440-D445. doi: 10.1093/nar/gkw1058. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899612 Free PMC article.

10

BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification.

Djoumbou-Feunang Y, Fiamoncini J, Gil-de-la-Fuente A, Greiner R, Manach C, Wishart DS. Djoumbou-Feunang Y, et al. Among authors: wishart ds. J Cheminform. 2019 Jan 5;11(1):2. doi: 10.1186/s13321-018-0324-5. J Cheminform. 2019. PMID: 30612223 Free PMC article.

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