Yu DJ - Search Results

1

Accurate RNA 5-methylcytosine site prediction based on heuristic physical-chemical properties reduction and classifier ensemble.

Zhang M, Xu Y, Li L, Liu Z, Yang X, Yu DJ. Zhang M, et al. Among authors: yu dj. Anal Biochem. 2018 Jun 1;550:41-48. doi: 10.1016/j.ab.2018.03.027. Epub 2018 Apr 9. Anal Biochem. 2018. PMID: 29649472

2

TargetATPsite: a template-free method for ATP-binding sites prediction with residue evolution image sparse representation and classifier ensemble.

Yu DJ, Hu J, Huang Y, Shen HB, Qi Y, Tang ZM, Yang JY. Yu DJ, et al. J Comput Chem. 2013 Apr 30;34(11):974-85. doi: 10.1002/jcc.23219. Epub 2013 Jan 3. J Comput Chem. 2013. PMID: 23288787 Free article.

3

Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble.

Yu DJ, Hu J, Yan H, Yang XB, Yang JY, Shen HB. Yu DJ, et al. BMC Bioinformatics. 2014 Sep 5;15(1):297. doi: 10.1186/1471-2105-15-297. BMC Bioinformatics. 2014. PMID: 25189131 Free PMC article.

4

A new supervised over-sampling algorithm with application to protein-nucleotide binding residue prediction.

Hu J, He X, Yu DJ, Yang XB, Yang JY, Shen HB. Hu J, et al. Among authors: yu dj. PLoS One. 2014 Sep 17;9(9):e107676. doi: 10.1371/journal.pone.0107676. eCollection 2014. PLoS One. 2014. PMID: 25229688 Free PMC article.

5

Rough set approach to incomplete multiscale information system.

Yang X, Qi Y, Yu D, Yu H, Song X, Yang J. Yang X, et al. ScientificWorldJournal. 2014;2014:538968. doi: 10.1155/2014/538968. Epub 2014 Aug 17. ScientificWorldJournal. 2014. PMID: 25276852 Free PMC article.

6

Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression.

Yu DJ, Li Y, Hu J, Yang X, Yang JY, Shen HB. Yu DJ, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 May-Jun;12(3):611-21. doi: 10.1109/TCBB.2014.2359451. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357272

7

Prediction of Protein-Protein Interaction Sites with Machine-Learning-Based Data-Cleaning and Post-Filtering Procedures.

Liu GH, Shen HB, Yu DJ. Liu GH, et al. Among authors: yu dj. J Membr Biol. 2016 Apr;249(1-2):141-53. doi: 10.1007/s00232-015-9856-z. Epub 2015 Nov 12. J Membr Biol. 2016. PMID: 26563228

8

pRNAm-PC: Predicting N(6)-methyladenosine sites in RNA sequences via physical-chemical properties.

Liu Z, Xiao X, Yu DJ, Jia J, Qiu WR, Chou KC. Liu Z, et al. Among authors: yu dj. Anal Biochem. 2016 Mar 15;497:60-7. doi: 10.1016/j.ab.2015.12.017. Epub 2015 Dec 31. Anal Biochem. 2016. PMID: 26748145

9

Improving N(6)-methyladenosine site prediction with heuristic selection of nucleotide physical-chemical properties.

Zhang M, Sun JW, Liu Z, Ren MW, Shen HB, Yu DJ. Zhang M, et al. Among authors: yu dj. Anal Biochem. 2016 Sep 1;508:104-13. doi: 10.1016/j.ab.2016.06.001. Epub 2016 Jun 11. Anal Biochem. 2016. PMID: 27293216

10

TargetM6A: Identifying N⁶-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine.

Li GQ, Liu Z, Shen HB, Yu DJ. Li GQ, et al. Among authors: yu dj. IEEE Trans Nanobioscience. 2016 Oct;15(7):674-682. doi: 10.1109/TNB.2016.2599115. Epub 2016 Aug 10. IEEE Trans Nanobioscience. 2016. PMID: 27552763

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