Dennis JH - Search Results

1

iSeg: an efficient algorithm for segmentation of genomic and epigenomic data.

Girimurugan SB, Liu Y, Lung PY, Vera DL, Dennis JH, Bass HW, Zhang J. Girimurugan SB, et al. Among authors: dennis jh. BMC Bioinformatics. 2018 Apr 11;19(1):131. doi: 10.1186/s12859-018-2140-3. BMC Bioinformatics. 2018. PMID: 29642840 Free PMC article.

2

The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed.

Sexton BS, Avey D, Druliner BR, Fincher JA, Vera DL, Grau DJ, Borowsky ML, Gupta S, Girimurugan SB, Chicken E, Zhang J, Noble WS, Zhu F, Kingston RE, Dennis JH. Sexton BS, et al. Among authors: dennis jh. Genome Res. 2014 Feb;24(2):251-9. doi: 10.1101/gr.160150.113. Epub 2013 Dec 5. Genome Res. 2014. PMID: 24310001 Free PMC article.

3

Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.

Vera DL, Madzima TF, Labonne JD, Alam MP, Hoffman GG, Girimurugan SB, Zhang J, McGinnis KM, Dennis JH, Bass HW. Vera DL, et al. Among authors: dennis jh. Plant Cell. 2014 Oct;26(10):3883-93. doi: 10.1105/tpc.114.130609. Epub 2014 Oct 31. Plant Cell. 2014. PMID: 25361955 Free PMC article.

4

Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L).

Turpin ZM, Vera DL, Savadel SD, Lung PY, Wear EE, Mickelson-Young L, Thompson WF, Hanley-Bowdoin L, Dennis JH, Zhang J, Bass HW. Turpin ZM, et al. Among authors: dennis jh. Data Brief. 2018 Aug 10;20:358-363. doi: 10.1016/j.dib.2018.08.015. eCollection 2018 Oct. Data Brief. 2018. PMID: 30175199 Free PMC article.

5

The native cistrome and sequence motif families of the maize ear.

Savadel SD, Hartwig T, Turpin ZM, Vera DL, Lung PY, Sui X, Blank M, Frommer WB, Dennis JH, Zhang J, Bass HW. Savadel SD, et al. Among authors: dennis jh. PLoS Genet. 2021 Aug 12;17(8):e1009689. doi: 10.1371/journal.pgen.1009689. eCollection 2021 Aug. PLoS Genet. 2021. PMID: 34383745 Free PMC article.

6

Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales.

Fincher JA, Vera DL, Hughes DD, McGinnis KM, Dennis JH, Bass HW. Fincher JA, et al. Among authors: dennis jh. Plant Physiol. 2013 Jun;162(2):1127-41. doi: 10.1104/pp.113.216432. Epub 2013 Apr 9. Plant Physiol. 2013. PMID: 23572549 Free PMC article.

7

Stimulation of the Drosophila immune system alters genome-wide nucleosome occupancy.

Ren Y, Vera DL, Hughes KA, Dennis JH. Ren Y, et al. Among authors: dennis jh. Genom Data. 2015 Jan 9;3:146-7. doi: 10.1016/j.gdata.2015.01.001. eCollection 2015 Mar. Genom Data. 2015. PMID: 26484165 Free PMC article.

8

Hierarchical regulation of the genome: global changes in nucleosome organization potentiate genome response.

Sexton BS, Druliner BR, Vera DL, Avey D, Zhu F, Dennis JH. Sexton BS, et al. Among authors: dennis jh. Oncotarget. 2016 Feb 9;7(6):6460-75. doi: 10.18632/oncotarget.6841. Oncotarget. 2016. PMID: 26771136 Free PMC article.

9

Chromatin patterns associated with lung adenocarcinoma progression.

Druliner BR, Fincher JA, Sexton BS, Vera DL, Roche M, Lyle S, Dennis JH. Druliner BR, et al. Among authors: dennis jh. Cell Cycle. 2013 May 15;12(10):1536-43. doi: 10.4161/cc.24664. Epub 2013 Apr 17. Cell Cycle. 2013. PMID: 23598721 Free PMC article.

10

Comprehensive nucleosome mapping of the human genome in cancer progression.

Druliner BR, Vera D, Johnson R, Ruan X, Apone LM, Dimalanta ET, Stewart FJ, Boardman L, Dennis JH. Druliner BR, et al. Among authors: dennis jh. Oncotarget. 2016 Mar 22;7(12):13429-45. doi: 10.18632/oncotarget.6811. Oncotarget. 2016. PMID: 26735342 Free PMC article.

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