Levy RM - Search Results

1

The Excess Chemical Potential of Water at the Interface with a Protein from End Point Simulations.

Zhang BW, Cui D, Matubayasi N, Levy RM. Zhang BW, et al. Among authors: levy rm. J Phys Chem B. 2018 May 3;122(17):4700-4707. doi: 10.1021/acs.jpcb.8b02666. Epub 2018 Apr 23. J Phys Chem B. 2018. PMID: 29634902 Free PMC article.

2

Protein hydration and unfolding--insights from experimental partial specific volumes and unfolded protein models.

Murphy LR, Matubayasi N, Payne VA, Levy RM. Murphy LR, et al. Among authors: levy rm. Fold Des. 1998;3(2):105-18. doi: 10.1016/S1359-0278(98)00016-9. Fold Des. 1998. PMID: 9565755

3

Temperature weighted histogram analysis method, replica exchange, and transition paths.

Gallicchio E, Andrec M, Felts AK, Levy RM. Gallicchio E, et al. Among authors: levy rm. J Phys Chem B. 2005 Apr 14;109(14):6722-31. doi: 10.1021/jp045294f. J Phys Chem B. 2005. PMID: 16851756

4

Simple continuous and discrete models for simulating replica exchange simulations of protein folding.

Zheng W, Andrec M, Gallicchio E, Levy RM. Zheng W, et al. Among authors: levy rm. J Phys Chem B. 2008 May 15;112(19):6083-93. doi: 10.1021/jp076377+. Epub 2008 Feb 6. J Phys Chem B. 2008. PMID: 18251533 Free PMC article.

5

Recovering kinetics from a simplified protein folding model using replica exchange simulations: a kinetic network and effective stochastic dynamics.

Zheng W, Andrec M, Gallicchio E, Levy RM. Zheng W, et al. Among authors: levy rm. J Phys Chem B. 2009 Aug 27;113(34):11702-9. doi: 10.1021/jp900445t. J Phys Chem B. 2009. PMID: 19655770 Free PMC article.

6

Kinetic network study of the diversity and temperature dependence of Trp-Cage folding pathways: combining transition path theory with stochastic simulations.

Zheng W, Gallicchio E, Deng N, Andrec M, Levy RM. Zheng W, et al. Among authors: levy rm. J Phys Chem B. 2011 Feb 17;115(6):1512-23. doi: 10.1021/jp1089596. Epub 2011 Jan 21. J Phys Chem B. 2011. PMID: 21254767 Free PMC article.

7

How kinetics within the unfolded state affects protein folding: an analysis based on markov state models and an ultra-long MD trajectory.

Deng NJ, Dai W, Levy RM. Deng NJ, et al. Among authors: levy rm. J Phys Chem B. 2013 Oct 24;117(42):12787-99. doi: 10.1021/jp401962k. Epub 2013 Jun 13. J Phys Chem B. 2013. PMID: 23705683 Free PMC article.

8

Molecular dynamics of the proline switch and its role in Crk signaling.

Xia J, Levy RM. Xia J, et al. Among authors: levy rm. J Phys Chem B. 2014 May 1;118(17):4535-45. doi: 10.1021/jp5013297. Epub 2014 Apr 16. J Phys Chem B. 2014. PMID: 24702481 Free PMC article.

9

Distinguishing binders from false positives by free energy calculations: fragment screening against the flap site of HIV protease.

Deng N, Forli S, He P, Perryman A, Wickstrom L, Vijayan RS, Tiefenbrunn T, Stout D, Gallicchio E, Olson AJ, Levy RM. Deng N, et al. Among authors: levy rm. J Phys Chem B. 2015 Jan 22;119(3):976-88. doi: 10.1021/jp506376z. Epub 2014 Sep 17. J Phys Chem B. 2015. PMID: 25189630 Free PMC article.

10

Conformational analysis of the DFG-out kinase motif and biochemical profiling of structurally validated type II inhibitors.

Vijayan RS, He P, Modi V, Duong-Ly KC, Ma H, Peterson JR, Dunbrack RL Jr, Levy RM. Vijayan RS, et al. Among authors: levy rm. J Med Chem. 2015 Jan 8;58(1):466-79. doi: 10.1021/jm501603h. Epub 2014 Dec 12. J Med Chem. 2015. PMID: 25478866 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

442 results

Search Page

Filters