Hashemifar S - Search Results

1

Chemokine expression in the early response to injury in human airway epithelial cells.

Xie B, Laxman B, Hashemifar S, Stern R, Gilliam TC, Maltsev N, White SR. Xie B, et al. Among authors: hashemifar s. PLoS One. 2018 Mar 13;13(3):e0193334. doi: 10.1371/journal.pone.0193334. eCollection 2018. PLoS One. 2018. PMID: 29534074 Free PMC article.

2

Lynx: a knowledge base and an analytical workbench for integrative medicine.

Sulakhe D, Xie B, Taylor A, D'Souza M, Balasubramanian S, Hashemifar S, White S, Dave UJ, Agam G, Xu J, Wang S, Gilliam TC, Maltsev N. Sulakhe D, et al. Among authors: hashemifar s. Nucleic Acids Res. 2016 Jan 4;44(D1):D882-7. doi: 10.1093/nar/gkv1257. Epub 2015 Nov 20. Nucleic Acids Res. 2016. PMID: 26590263 Free PMC article.

3

Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks.

D'Souza M, Sulakhe D, Wang S, Xie B, Hashemifar S, Taylor A, Dubchak I, Conrad Gilliam T, Maltsev N. D'Souza M, et al. Among authors: hashemifar s. Methods Mol Biol. 2017;1613:85-99. doi: 10.1007/978-1-4939-7027-8_5. Methods Mol Biol. 2017. PMID: 28849559

4

Differential cell-intrinsic regulations of germinal center B and T cells by miR-146a and miR-146b.

Cho S, Lee HM, Yu IS, Choi YS, Huang HY, Hashemifar SS, Lin LL, Chen MC, Afanasiev ND, Khan AA, Lin SW, Rudensky AY, Crotty S, Lu LF. Cho S, et al. Among authors: hashemifar ss. Nat Commun. 2018 Jul 16;9(1):2757. doi: 10.1038/s41467-018-05196-3. Nat Commun. 2018. PMID: 30013024 Free PMC article.

5

ModuleAlign: module-based global alignment of protein-protein interaction networks.

Hashemifar S, Ma J, Naveed H, Canzar S, Xu J. Hashemifar S, et al. Bioinformatics. 2016 Sep 1;32(17):i658-i664. doi: 10.1093/bioinformatics/btw447. Bioinformatics. 2016. PMID: 27587686

6

Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization.

Hashemifar S, Huang Q, Xu J. Hashemifar S, et al. J Comput Biol. 2016 Nov;23(11):903-911. doi: 10.1089/cmb.2016.0025. Epub 2016 Jul 18. J Comput Biol. 2016. PMID: 27428933

7

HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks.

Hashemifar S, Xu J. Hashemifar S, et al. Bioinformatics. 2014 Sep 1;30(17):i438-44. doi: 10.1093/bioinformatics/btu450. Bioinformatics. 2014. PMID: 25161231 Free PMC article.

8

Predicting protein-protein interactions through sequence-based deep learning.

Hashemifar S, Neyshabur B, Khan AA, Xu J. Hashemifar S, et al. Bioinformatics. 2018 Sep 1;34(17):i802-i810. doi: 10.1093/bioinformatics/bty573. Bioinformatics. 2018. PMID: 30423091 Free PMC article.

9

Excessive expression of miR-27 impairs Treg-mediated immunological tolerance.

Cruz LO, Hashemifar SS, Wu CJ, Cho S, Nguyen DT, Lin LL, Khan AA, Lu LF. Cruz LO, et al. Among authors: hashemifar ss. J Clin Invest. 2017 Feb 1;127(2):530-542. doi: 10.1172/JCI88415. Epub 2017 Jan 9. J Clin Invest. 2017. PMID: 28067667 Free PMC article.

10

NETAL: a new graph-based method for global alignment of protein-protein interaction networks.

Neyshabur B, Khadem A, Hashemifar S, Arab SS. Neyshabur B, et al. Among authors: hashemifar s. Bioinformatics. 2013 Jul 1;29(13):1654-62. doi: 10.1093/bioinformatics/btt202. Epub 2013 May 21. Bioinformatics. 2013. PMID: 23696650

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