McDermaid A - Search Results

1

Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes.

Niu SY, Yang J, McDermaid A, Zhao J, Kang Y, Ma Q. Niu SY, et al. Among authors: mcdermaid a. Brief Bioinform. 2018 Mar 1;19(2):360. doi: 10.1093/bib/bby012. Brief Bioinform. 2018. PMID: 29481588 No abstract available.

2

Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes.

Niu SY, Yang J, McDermaid A, Zhao J, Kang Y, Ma Q. Niu SY, et al. Among authors: mcdermaid a. Brief Bioinform. 2018 Nov 27;19(6):1415-1429. doi: 10.1093/bib/bbx051. Brief Bioinform. 2018. PMID: 28481971 Review.

3

An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data.

Liu B, Yang J, Li Y, McDermaid A, Ma Q. Liu B, et al. Among authors: mcdermaid a. Brief Bioinform. 2018 Sep 28;19(5):1069-1081. doi: 10.1093/bib/bbx026. Brief Bioinform. 2018. PMID: 28334268 Review.

4

Interpretation of differential gene expression results of RNA-seq data: review and integration.

McDermaid A, Monier B, Zhao J, Liu B, Ma Q. McDermaid A, et al. Brief Bioinform. 2019 Nov 27;20(6):2044-2054. doi: 10.1093/bib/bby067. Brief Bioinform. 2019. PMID: 30099484 Free PMC article. Review.

5

DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses.

Yang J, Chen X, McDermaid A, Ma Q. Yang J, et al. Among authors: mcdermaid a. Bioinformatics. 2017 Aug 15;33(16):2586-2588. doi: 10.1093/bioinformatics/btx223. Bioinformatics. 2017. PMID: 28419194

6

MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.

Ma A, Sun M, McDermaid A, Liu B, Ma Q. Ma A, et al. Among authors: mcdermaid a. Bioinformatics. 2019 Nov 1;35(21):4474-4477. doi: 10.1093/bioinformatics/btz414. Bioinformatics. 2019. PMID: 31116375 Free PMC article.

7

MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.

Ma A, Sun M, McDermaid A, Liu B, Ma Q. Ma A, et al. Among authors: mcdermaid a. Bioinformatics. 2019 Dec 15;35(24):5397. doi: 10.1093/bioinformatics/btz696. Bioinformatics. 2019. PMID: 31580397 Free PMC article. No abstract available.

8

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis.

Monier B, McDermaid A, Wang C, Zhao J, Miller A, Fennell A, Ma Q. Monier B, et al. Among authors: mcdermaid a. PLoS Comput Biol. 2019 Feb 14;15(2):e1006792. doi: 10.1371/journal.pcbi.1006792. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30763315 Free PMC article.

9

Predicting outcomes of chronic kidney disease from EMR data based on Random Forest Regression.

Zhao J, Gu S, McDermaid A. Zhao J, et al. Among authors: mcdermaid a. Math Biosci. 2019 Apr;310:24-30. doi: 10.1016/j.mbs.2019.02.001. Epub 2019 Feb 12. Math Biosci. 2019. PMID: 30768948 Free PMC article.

10

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis.

Chen X, Ma A, McDermaid A, Zhang H, Liu C, Cao H, Ma Q. Chen X, et al. Among authors: mcdermaid a. Genes (Basel). 2018 May 30;9(6):278. doi: 10.3390/genes9060278. Genes (Basel). 2018. PMID: 29849014 Free PMC article.

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