Vingron M - Search Results

1

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer-promoter contacts.

Thormann V, Rothkegel MC, Schöpflin R, Glaser LV, Djuric P, Li N, Chung HR, Schwahn K, Vingron M, Meijsing SH. Thormann V, et al. Among authors: vingron m. Nucleic Acids Res. 2018 Apr 6;46(6):3258. doi: 10.1093/nar/gky122. Nucleic Acids Res. 2018. PMID: 29471333 Free PMC article. No abstract available.

2

A physical model for tiling array analysis.

Chung HR, Kostka D, Vingron M. Chung HR, et al. Among authors: vingron m. Bioinformatics. 2007 Jul 1;23(13):i80-6. doi: 10.1093/bioinformatics/btm167. Bioinformatics. 2007. PMID: 17646349

3

Sequence-dependent nucleosome positioning.

Chung HR, Vingron M. Chung HR, et al. Among authors: vingron m. J Mol Biol. 2009 Mar 13;386(5):1411-22. doi: 10.1016/j.jmb.2008.11.049. Epub 2008 Dec 3. J Mol Biol. 2009. PMID: 19070622

4

Methylation and deamination of CpGs generate p53-binding sites on a genomic scale.

Zemojtel T, Kielbasa SM, Arndt PF, Chung HR, Vingron M. Zemojtel T, et al. Among authors: vingron m. Trends Genet. 2009 Feb;25(2):63-6. doi: 10.1016/j.tig.2008.11.005. Epub 2008 Dec 26. Trends Genet. 2009. PMID: 19101055

5

Comparison of sequence-dependent tiling array normalization approaches.

Chung HR, Vingron M. Chung HR, et al. Among authors: vingron m. BMC Bioinformatics. 2009 Jun 30;10:204. doi: 10.1186/1471-2105-10-204. BMC Bioinformatics. 2009. PMID: 19566918 Free PMC article.

6

CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses.

Roider HG, Lenhard B, Kanhere A, Haas SA, Vingron M. Roider HG, et al. Among authors: vingron m. Nucleic Acids Res. 2009 Oct;37(19):6305-15. doi: 10.1093/nar/gkp682. Epub 2009 Sep 6. Nucleic Acids Res. 2009. PMID: 19736212 Free PMC article.

7

Histone modification levels are predictive for gene expression.

Karlić R, Chung HR, Lasserre J, Vlahovicek K, Vingron M. Karlić R, et al. Among authors: vingron m. Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2926-31. doi: 10.1073/pnas.0909344107. Epub 2010 Feb 1. Proc Natl Acad Sci U S A. 2010. PMID: 20133639 Free PMC article.

8

Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters.

Warnatz HJ, Querfurth R, Guerasimova A, Cheng X, Haas SA, Hufton AL, Manke T, Vanhecke D, Nietfeld W, Vingron M, Janitz M, Lehrach H, Yaspo ML. Warnatz HJ, et al. Among authors: vingron m. Nucleic Acids Res. 2010 Oct;38(18):6112-23. doi: 10.1093/nar/gkq402. Epub 2010 May 21. Nucleic Acids Res. 2010. PMID: 20494980 Free PMC article.

9

The effect of micrococcal nuclease digestion on nucleosome positioning data.

Chung HR, Dunkel I, Heise F, Linke C, Krobitsch S, Ehrenhofer-Murray AE, Sperling SR, Vingron M. Chung HR, et al. Among authors: vingron m. PLoS One. 2010 Dec 29;5(12):e15754. doi: 10.1371/journal.pone.0015754. PLoS One. 2010. PMID: 21206756 Free PMC article.

10

Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange.

Heise F, Chung HR, Weber JM, Xu Z, Klein-Hitpass L, Steinmetz LM, Vingron M, Ehrenhofer-Murray AE. Heise F, et al. Among authors: vingron m. Nucleic Acids Res. 2012 Jan;40(1):65-74. doi: 10.1093/nar/gkr649. Epub 2011 Sep 9. Nucleic Acids Res. 2012. PMID: 21908408 Free PMC article.

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