Kim J - Search Results

1

PIVOT: platform for interactive analysis and visualization of transcriptomics data.

Zhu Q, Fisher SA, Dueck H, Middleton S, Khaladkar M, Kim J. Zhu Q, et al. Among authors: kim j. BMC Bioinformatics. 2018 Jan 5;19(1):6. doi: 10.1186/s12859-017-1994-0. BMC Bioinformatics. 2018. PMID: 29304726 Free PMC article.

2

Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons.

Buckley PT, Lee MT, Sul JY, Miyashiro KY, Bell TJ, Fisher SA, Kim J, Eberwine J. Buckley PT, et al. Among authors: kim j. Neuron. 2011 Mar 10;69(5):877-84. doi: 10.1016/j.neuron.2011.02.028. Neuron. 2011. PMID: 21382548 Free PMC article.

3

Quantitative biology of single neurons.

Eberwine J, Lovatt D, Buckley P, Dueck H, Francis C, Kim TK, Lee J, Lee M, Miyashiro K, Morris J, Peritz T, Schochet T, Spaethling J, Sul JY, Kim J. Eberwine J, et al. Among authors: kim tk, kim j. J R Soc Interface. 2012 Dec 7;9(77):3165-83. doi: 10.1098/rsif.2012.0417. Epub 2012 Aug 22. J R Soc Interface. 2012. PMID: 22915636 Free PMC article. Review.

4

Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons.

Khaladkar M, Buckley PT, Lee MT, Francis C, Eghbal MM, Chuong T, Suresh S, Kuhn B, Eberwine J, Kim J. Khaladkar M, et al. Among authors: kim j. PLoS One. 2013 Oct 3;8(10):e76194. doi: 10.1371/journal.pone.0076194. eCollection 2013. PLoS One. 2013. PMID: 24098440 Free PMC article.

5

Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis.

Buckley PT, Khaladkar M, Kim J, Eberwine J. Buckley PT, et al. Among authors: kim j. Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):223-30. doi: 10.1002/wrna.1203. Epub 2013 Nov 4. Wiley Interdiscip Rev RNA. 2014. PMID: 24190870 Free PMC article. Review.

6

Serotonergic neuron regulation informed by in vivo single-cell transcriptomics.

Spaethling JM, Piel D, Dueck H, Buckley PT, Morris JF, Fisher SA, Lee J, Sul JY, Kim J, Bartfai T, Beck SG, Eberwine JH. Spaethling JM, et al. Among authors: kim j. FASEB J. 2014 Feb;28(2):771-80. doi: 10.1096/fj.13-240267. Epub 2013 Nov 5. FASEB J. 2014. PMID: 24192459 Free PMC article.

7

Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue.

Lovatt D, Ruble BK, Lee J, Dueck H, Kim TK, Fisher S, Francis C, Spaethling JM, Wolf JA, Grady MS, Ulyanova AV, Yeldell SB, Griepenburg JC, Buckley PT, Kim J, Sul JY, Dmochowski IJ, Eberwine J. Lovatt D, et al. Among authors: kim tk, kim j. Nat Methods. 2014 Feb;11(2):190-6. doi: 10.1038/nmeth.2804. Epub 2014 Jan 12. Nat Methods. 2014. PMID: 24412976 Free PMC article.

8

NoFold: RNA structure clustering without folding or alignment.

Middleton SA, Kim J. Middleton SA, et al. Among authors: kim j. RNA. 2014 Nov;20(11):1671-83. doi: 10.1261/rna.041913.113. Epub 2014 Sep 18. RNA. 2014. PMID: 25234928 Free PMC article.

9

Divergence of RNA localization between rat and mouse neurons reveals the potential for rapid brain evolution.

Francis C, Natarajan S, Lee MT, Khaladkar M, Buckley PT, Sul JY, Eberwine J, Kim J. Francis C, et al. Among authors: kim j. BMC Genomics. 2014 Oct 9;15(1):883. doi: 10.1186/1471-2164-15-883. BMC Genomics. 2014. PMID: 25301173 Free PMC article.

10

The exonuclease Nibbler regulates age-associated traits and modulates piRNA length in Drosophila.

Feltzin VL, Khaladkar M, Abe M, Parisi M, Hendriks GJ, Kim J, Bonini NM. Feltzin VL, et al. Among authors: kim j. Aging Cell. 2015 Jun;14(3):443-52. doi: 10.1111/acel.12323. Epub 2015 Mar 6. Aging Cell. 2015. PMID: 25754031 Free PMC article.

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