Li YI - Search Results

1

Impact of regulatory variation across human iPSCs and differentiated cells.

Banovich NE, Li YI, Raj A, Ward MC, Greenside P, Calderon D, Tung PY, Burnett JE, Myrthil M, Thomas SM, Burrows CK, Romero IG, Pavlovic BJ, Kundaje A, Pritchard JK, Gilad Y. Banovich NE, et al. Among authors: li yi. Genome Res. 2018 Jan;28(1):122-131. doi: 10.1101/gr.224436.117. Epub 2017 Dec 5. Genome Res. 2018. PMID: 29208628 Free PMC article.

2

RNA splicing is a primary link between genetic variation and disease.

Li YI, van de Geijn B, Raj A, Knowles DA, Petti AA, Golan D, Gilad Y, Pritchard JK. Li YI, et al. Science. 2016 Apr 29;352(6285):600-4. doi: 10.1126/science.aad9417. Epub 2016 Apr 28. Science. 2016. PMID: 27126046 Free PMC article.

3

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling.

Raj A, Wang SH, Shim H, Harpak A, Li YI, Engelmann B, Stephens M, Gilad Y, Pritchard JK. Raj A, et al. Among authors: li yi. Elife. 2016 May 27;5:e13328. doi: 10.7554/eLife.13328. Elife. 2016. PMID: 27232982 Free PMC article.

4

An Expanded View of Complex Traits: From Polygenic to Omnigenic.

Boyle EA, Li YI, Pritchard JK. Boyle EA, et al. Among authors: li yi. Cell. 2017 Jun 15;169(7):1177-1186. doi: 10.1016/j.cell.2017.05.038. Cell. 2017. PMID: 28622505 Free PMC article. Review.

5

Annotation-free quantification of RNA splicing using LeafCutter.

Li YI, Knowles DA, Humphrey J, Barbeira AN, Dickinson SP, Im HK, Pritchard JK. Li YI, et al. Nat Genet. 2018 Jan;50(1):151-158. doi: 10.1038/s41588-017-0004-9. Epub 2017 Dec 11. Nat Genet. 2018. PMID: 29229983 Free PMC article.

6

Discovery and characterization of variance QTLs in human induced pluripotent stem cells.

Sarkar AK, Tung PY, Blischak JD, Burnett JE, Li YI, Stephens M, Gilad Y. Sarkar AK, et al. Among authors: li yi. PLoS Genet. 2019 Apr 19;15(4):e1008045. doi: 10.1371/journal.pgen.1008045. eCollection 2019 Apr. PLoS Genet. 2019. PMID: 31002671 Free PMC article.

7

Trans Effects on Gene Expression Can Drive Omnigenic Inheritance.

Liu X, Li YI, Pritchard JK. Liu X, et al. Among authors: li yi. Cell. 2019 May 2;177(4):1022-1034.e6. doi: 10.1016/j.cell.2019.04.014. Cell. 2019. PMID: 31051098 Free PMC article.

8

Imputation of single-cell gene expression with an autoencoder neural network.

Badsha MB, Li R, Liu B, Li YI, Xian M, Banovich NE, Fu AQ. Badsha MB, et al. Among authors: li yi, li r. Quant Biol. 2020 Mar;8(1):78-94. doi: 10.1007/s40484-019-0192-7. Epub 2020 Jan 22. Quant Biol. 2020. PMID: 32274259 Free PMC article.

9

Alternative polyadenylation mediates genetic regulation of gene expression.

Mittleman BE, Pott S, Warland S, Zeng T, Mu Z, Kaur M, Gilad Y, Li Y. Mittleman BE, et al. Elife. 2020 Jun 25;9:e57492. doi: 10.7554/eLife.57492. Elife. 2020. PMID: 32584258 Free PMC article.

10

Perspectives on ENCODE.

ENCODE Project Consortium; Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. ENCODE Project Consortium, et al. Nature. 2020 Jul;583(7818):693-698. doi: 10.1038/s41586-020-2449-8. Epub 2020 Jul 29. Nature. 2020. PMID: 32728248 Free PMC article.

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