Kolář MH - Search Results

1

Molecular simulations of the ribosome and associated translation factors.

Bock LV, Kolář MH, Grubmüller H. Bock LV, et al. Among authors: kolar mh. Curr Opin Struct Biol. 2018 Apr;49:27-35. doi: 10.1016/j.sbi.2017.11.003. Epub 2017 Dec 1. Curr Opin Struct Biol. 2018. PMID: 29202442 Free article. Review.

2

Folding of VemP into translation-arresting secondary structure is driven by the ribosome exit tunnel.

Kolář MH, Nagy G, Kunkel J, Vaiana SM, Bock LV, Grubmüller H. Kolář MH, et al. Nucleic Acids Res. 2022 Feb 28;50(4):2258-2269. doi: 10.1093/nar/gkac038. Nucleic Acids Res. 2022. PMID: 35150281 Free PMC article.

3

Simulation of Complex Biomolecular Systems: The Ribosome Challenge.

Bock LV, Gabrielli S, Kolář MH, Grubmüller H. Bock LV, et al. Among authors: kolar mh. Annu Rev Biophys. 2023 May 9;52:361-390. doi: 10.1146/annurev-biophys-111622-091147. Epub 2023 Jan 31. Annu Rev Biophys. 2023. PMID: 36719969 Free article. Review.

4

Three Stages of Nascent Protein Translocation Through the Ribosome Exit Tunnel.

Kolář MH, McGrath H, Nepomuceno FC, Černeková M. Kolář MH, et al. Wiley Interdiscip Rev RNA. 2024 Nov-Dec;15(6):e1873. doi: 10.1002/wrna.1873. Wiley Interdiscip Rev RNA. 2024. PMID: 39496527 Review.

5

The effect of off-center

σ

-hole on the atom-centered partial charges in halogenated molecules.

Leskourová A, Kolář MH. Leskourová A, et al. Among authors: kolar mh. J Comput Chem. 2022 May 5;43(12):864-869. doi: 10.1002/jcc.26841. Epub 2022 Mar 17. J Comput Chem. 2022. PMID: 35298034

6

Binding of the peptide deformylase on the ribosome surface modulates the exit tunnel interior.

McGrath H, Černeková M, Kolář MH. McGrath H, et al. Among authors: kolar mh. Biophys J. 2022 Dec 6;121(23):4443-4451. doi: 10.1016/j.bpj.2022.11.004. Epub 2022 Nov 5. Biophys J. 2022. PMID: 36335428 Free PMC article.

7

Sequence-dependent configurational entropy change of DNA upon intercalation.

Kolář M, Kubař T, Hobza P. Kolář M, et al. J Phys Chem B. 2010 Oct 28;114(42):13446-54. doi: 10.1021/jp1019153. J Phys Chem B. 2010. PMID: 20925395

8

Assessing the accuracy and performance of implicit solvent models for drug molecules: conformational ensemble approaches.

Kolář M, Fanfrlík J, Lepšík M, Forti F, Luque FJ, Hobza P. Kolář M, et al. J Phys Chem B. 2013 May 16;117(19):5950-62. doi: 10.1021/jp402117c. Epub 2013 May 6. J Phys Chem B. 2013. PMID: 23600402

9

The strength and directionality of a halogen bond are co-determined by the magnitude and size of the σ-hole.

Kolář M, Hostaš J, Hobza P. Kolář M, et al. Phys Chem Chem Phys. 2014 Jun 7;16(21):9987-96. doi: 10.1039/c3cp55188a. Epub 2014 Jan 30. Phys Chem Chem Phys. 2014. PMID: 24477636

10

Statistical analysis of σ-holes: a novel complementary view on halogen bonding.

Kolář MH, Carloni P, Hobza P. Kolář MH, et al. Phys Chem Chem Phys. 2014 Sep 28;16(36):19111-4. doi: 10.1039/c4cp02621g. Phys Chem Chem Phys. 2014. PMID: 25099396

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