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Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.
Nucleic Acids Res. 2018 Jan 4;46(D1):D335-D342. doi: 10.1093/nar/gkx1038.
Nucleic Acids Res. 2018.
PMID: 29112718
Free PMC article.
Non-Coding RNA Analysis Using the Rfam Database.
Kalvari I, Nawrocki EP, Argasinska J, Quinones-Olvera N, Finn RD, Bateman A, Petrov AI.
Kalvari I, et al. Among authors: quinones olvera n.
Curr Protoc Bioinformatics. 2018 Jun;62(1):e51. doi: 10.1002/cpbi.51. Epub 2018 Jun 5.
Curr Protoc Bioinformatics. 2018.
PMID: 29927072
Free PMC article.
Item in Clipboard
Prophages encode phage-defense systems with cognate self-immunity.
Owen SV, Wenner N, Dulberger CL, Rodwell EV, Bowers-Barnard A, Quinones-Olvera N, Rigden DJ, Rubin EJ, Garner EC, Baym M, Hinton JCD.
Owen SV, et al. Among authors: quinones olvera n.
Cell Host Microbe. 2021 Nov 10;29(11):1620-1633.e8. doi: 10.1016/j.chom.2021.09.002. Epub 2021 Sep 30.
Cell Host Microbe. 2021.
PMID: 34597593
Free PMC article.
Item in Clipboard
The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid.
Canals R, Chaudhuri RR, Steiner RE, Owen SV, Quinones-Olvera N, Gordon MA, Baym M, Ibba M, Hinton JCD.
Canals R, et al. Among authors: quinones olvera n.
PLoS Pathog. 2019 Sep 27;15(9):e1007948. doi: 10.1371/journal.ppat.1007948. eCollection 2019 Sep.
PLoS Pathog. 2019.
PMID: 31560731
Free PMC article.
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Diverse and abundant phages exploit conjugative plasmids.
Quinones-Olvera N, Owen SV, McCully LM, Marin MG, Rand EA, Fan AC, Martins Dosumu OJ, Paul K, Sanchez Castaño CE, Petherbridge R, Paull JS, Baym M.
Quinones-Olvera N, et al.
Nat Commun. 2024 Apr 12;15(1):3197. doi: 10.1038/s41467-024-47416-z.
Nat Commun. 2024.
PMID: 38609370
Free PMC article.
Item in Clipboard
Analysis of the limited M. tuberculosis accessory genome reveals potential pitfalls of pan-genome analysis approaches.
Marin MG, Wippel C, Quinones-Olvera N, Behruznia M, Jeffrey BM, Harris M, Mann BC, Rosenthal A, Jacobson KR, Warren RM, Li H, Meehan CJ, Farhat MR.
Marin MG, et al. Among authors: quinones olvera n.
bioRxiv [Preprint]. 2024 May 4:2024.03.21.586149. doi: 10.1101/2024.03.21.586149.
bioRxiv. 2024.
PMID: 38585972
Free PMC article.
Preprint.
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Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression.
Břinda K, Lima L, Pignotti S, Quinones-Olvera N, Salikhov K, Chikhi R, Kucherov G, Iqbal Z, Baym M.
Břinda K, et al. Among authors: quinones olvera n.
bioRxiv [Preprint]. 2024 May 11:2023.04.15.536996. doi: 10.1101/2023.04.15.536996.
bioRxiv. 2024.
PMID: 37131636
Free PMC article.
Preprint.
Item in Clipboard
Diverse and abundant phages exploit conjugative plasmids.
Quinones-Olvera N, Owen SV, McCully LM, Marin MG, Rand EA, Fan AC, Martins Dosumu OJ, Paul K, Sanchez Castaño CE, Petherbridge R, Paull JS, Baym M.
Quinones-Olvera N, et al.
bioRxiv [Preprint]. 2023 Dec 21:2023.03.19.532758. doi: 10.1101/2023.03.19.532758.
bioRxiv. 2023.
Update in:
Nat Commun. 2024 Apr 12;15(1):3197. doi: 10.1038/s41467-024-47416-z.
PMID: 36993299
Free PMC article.
Updated.
Preprint.
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