Petushkov I - Search Results

1

Interplay between σ region 3.2 and secondary channel factors during promoter escape by bacterial RNA polymerase.

Petushkov I, Esyunina D, Mekler V, Severinov K, Pupov D, Kulbachinskiy A. Petushkov I, et al. Biochem J. 2017 Dec 1;474(24):4053-4064. doi: 10.1042/BCJ20170436. Biochem J. 2017. PMID: 29101286

2

Mutations in the CRE pocket of bacterial RNA polymerase affect multiple steps of transcription.

Petushkov I, Pupov D, Bass I, Kulbachinskiy A. Petushkov I, et al. Nucleic Acids Res. 2015 Jul 13;43(12):5798-809. doi: 10.1093/nar/gkv504. Epub 2015 May 18. Nucleic Acids Res. 2015. PMID: 25990734 Free PMC article.

3

σ38-dependent promoter-proximal pausing by bacterial RNA polymerase.

Petushkov I, Esyunina D, Kulbachinskiy A. Petushkov I, et al. Nucleic Acids Res. 2017 Apr 7;45(6):3006-3016. doi: 10.1093/nar/gkw1213. Nucleic Acids Res. 2017. PMID: 27928053 Free PMC article.

4

Possible roles of σ-dependent RNA polymerase pausing in transcription regulation.

Petushkov I, Esyunina D, Kulbachinskiy A. Petushkov I, et al. RNA Biol. 2017 Dec 2;14(12):1678-1682. doi: 10.1080/15476286.2017.1356568. Epub 2017 Sep 13. RNA Biol. 2017. PMID: 28816625 Free PMC article. Review.

5

Identification of amino acid residues involved in the dRP-lyase activity of human Pol ι.

Miropolskaya N, Petushkov I, Kulbachinskiy A, Makarova AV. Miropolskaya N, et al. Among authors: petushkov i. Sci Rep. 2017 Aug 31;7(1):10194. doi: 10.1038/s41598-017-10668-5. Sci Rep. 2017. PMID: 28860552 Free PMC article.

6

Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria.

Dulin D, Bauer DLV, Malinen AM, Bakermans JJW, Kaller M, Morichaud Z, Petushkov I, Depken M, Brodolin K, Kulbachinskiy A, Kapanidis AN. Dulin D, et al. Among authors: petushkov i. Nat Commun. 2018 Apr 16;9(1):1478. doi: 10.1038/s41467-018-03902-9. Nat Commun. 2018. PMID: 29662062 Free PMC article.

7

Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA.

Pupov D, Petushkov I, Esyunina D, Murakami KS, Kulbachinskiy A. Pupov D, et al. Among authors: petushkov i. Nucleic Acids Res. 2018 Nov 30;46(21):11477-11487. doi: 10.1093/nar/gky919. Nucleic Acids Res. 2018. PMID: 30321408 Free PMC article.

8

The σ²⁴ Subunit of Escherichia coli RNA Polymerase Can Induce Transcriptional Pausing in vitro.

Shikalov AB, Esyunina DM, Pupov DV, Kulbachinskiy AV, Petushkov IV. Shikalov AB, et al. Among authors: petushkov iv. Biochemistry (Mosc). 2019 Apr;84(4):426-434. doi: 10.1134/S0006297919040102. Biochemistry (Mosc). 2019. PMID: 31228934 Free article.

9

Rewiring of growth-dependent transcription regulation by a point mutation in region 1.1 of the housekeeping σ factor.

Pletnev P, Pupov D, Pshanichnaya L, Esyunina D, Petushkov I, Nesterchuk M, Osterman I, Rubtsova M, Mardanov A, Ravin N, Sergiev P, Kulbachinskiy A, Dontsova O. Pletnev P, et al. Among authors: petushkov i. Nucleic Acids Res. 2020 Nov 4;48(19):10802-10819. doi: 10.1093/nar/gkaa798. Nucleic Acids Res. 2020. PMID: 32997144 Free PMC article.

10

Role of Interactions of the CRE Region of Escherichia coli RNA Polymerase with Nontemplate DNA during Promoter Escape.

Petushkov IV, Kulbachinskiy AV. Petushkov IV, et al. Biochemistry (Mosc). 2020 Jul;85(7):792-800. doi: 10.1134/S000629792007007X. Biochemistry (Mosc). 2020. PMID: 33040723 Free article.

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