Kramer F - Search Results

1

ndexr-an R package to interface with the network data exchange.

Auer F, Hammoud Z, Ishkin A, Pratt D, Ideker T, Kramer F. Auer F, et al. Among authors: kramer f. Bioinformatics. 2018 Feb 15;34(4):716-717. doi: 10.1093/bioinformatics/btx683. Bioinformatics. 2018. PMID: 29087446 Free PMC article.

2

rBiopaxParser--an R package to parse, modify and visualize BioPAX data.

Kramer F, Bayerlová M, Klemm F, Bleckmann A, Beissbarth T. Kramer F, et al. Bioinformatics. 2013 Feb 15;29(4):520-2. doi: 10.1093/bioinformatics/bts710. Epub 2012 Dec 28. Bioinformatics. 2013. PMID: 23274212

3

mully: An R Package to Create, Modify and Visualize Multilayered Graphs.

Hammoud Z, Kramer F. Hammoud Z, et al. Among authors: kramer f. Genes (Basel). 2018 Oct 23;9(11):519. doi: 10.3390/genes9110519. Genes (Basel). 2018. PMID: 30360563 Free PMC article.

4

Multipath: An R Package to Generate Integrated Reproducible Pathway Models.

Hammoud Z, Kramer F. Hammoud Z, et al. Among authors: kramer f. Biology (Basel). 2020 Dec 21;9(12):483. doi: 10.3390/biology9120483. Biology (Basel). 2020. PMID: 33371258 Free PMC article.

5

Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer.

Chereda H, Bleckmann A, Menck K, Perera-Bel J, Stegmaier P, Auer F, Kramer F, Leha A, Beißbarth T. Chereda H, et al. Among authors: kramer f. Genome Med. 2021 Mar 11;13(1):42. doi: 10.1186/s13073-021-00845-7. Genome Med. 2021. PMID: 33706810 Free PMC article.

6

Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing.

Martinez-Hernandez JE, Hammoud Z, de Sousa AM, Kramer F, Monte-Neto RLD, Maracaja-Coutinho V, Martin AJM. Martinez-Hernandez JE, et al. Among authors: kramer f. Microbiol Spectr. 2021 Oct 31;9(2):e0101821. doi: 10.1128/Spectrum.01018-21. Epub 2021 Oct 20. Microbiol Spectr. 2021. PMID: 34668739 Free PMC article.

7

MISeval: A Metric Library for Medical Image Segmentation Evaluation.

Müller D, Hartmann D, Meyer P, Auer F, Soto-Rey I, Kramer F. Müller D, et al. Among authors: kramer f. Stud Health Technol Inform. 2022 May 25;294:33-37. doi: 10.3233/SHTI220391. Stud Health Technol Inform. 2022. PMID: 35612011

8

Implementation of Gene Expression Profiles in the HL7 FHIR Standard.

Auer F, Abdykalykova Z, Müller D, Kramer F. Auer F, et al. Among authors: kramer f. Stud Health Technol Inform. 2022 May 25;294:417-418. doi: 10.3233/SHTI220490. Stud Health Technol Inform. 2022. PMID: 35612112

9

Perspective on Code Submission and Automated Evaluation Platforms for University Teaching.

Auer F, Frei J, Müller D, Kramer F. Auer F, et al. Among authors: kramer f. Stud Health Technol Inform. 2022 Jun 6;290:912-916. doi: 10.3233/SHTI220212. Stud Health Technol Inform. 2022. PMID: 35673151

10

Data-dependent visualization of biological networks in the web-browser with NDExEdit.

Auer F, Mayer S, Kramer F. Auer F, et al. Among authors: kramer f. PLoS Comput Biol. 2022 Jun 8;18(6):e1010205. doi: 10.1371/journal.pcbi.1010205. eCollection 2022 Jun. PLoS Comput Biol. 2022. PMID: 35675360 Free PMC article.

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