Ellis SE - Search Results

1

Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder.

Andrews SV, Ellis SE, Bakulski KM, Sheppard B, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Arking DE, Ladd-Acosta C, Fallin MD. Andrews SV, et al. Among authors: ellis se. Nat Commun. 2017 Oct 24;8(1):1011. doi: 10.1038/s41467-017-00868-y. Nat Commun. 2017. PMID: 29066808 Free PMC article.

2

Transcriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia.

Ellis SE, Panitch R, West AB, Arking DE. Ellis SE, et al. Transl Psychiatry. 2016 May 24;6(5):e817. doi: 10.1038/tp.2016.87. Transl Psychiatry. 2016. PMID: 27219343 Free PMC article.

3

Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism.

Gupta S, Ellis SE, Ashar FN, Moes A, Bader JS, Zhan J, West AB, Arking DE. Gupta S, et al. Among authors: ellis se. Nat Commun. 2014 Dec 10;5:5748. doi: 10.1038/ncomms6748. Nat Commun. 2014. PMID: 25494366 Free PMC article.

4

Exaggerated CpH methylation in the autism-affected brain.

Ellis SE, Gupta S, Moes A, West AB, Arking DE. Ellis SE, et al. Mol Autism. 2017 Feb 17;8:6. doi: 10.1186/s13229-017-0119-y. eCollection 2017. Mol Autism. 2017. PMID: 28316770 Free PMC article.

5

RNA-Seq optimization with eQTL gold standards.

Ellis SE, Gupta S, Ashar FN, Bader JS, West AB, Arking DE. Ellis SE, et al. BMC Genomics. 2013 Dec 17;14:892. doi: 10.1186/1471-2164-14-892. BMC Genomics. 2013. PMID: 24341889 Free PMC article.

6

Reproducible RNA-seq analysis using recount2.

Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT. Collado-Torres L, et al. Among authors: ellis se. Nat Biotechnol. 2017 Apr 11;35(4):319-321. doi: 10.1038/nbt.3838. Nat Biotechnol. 2017. PMID: 28398307 Free PMC article. No abstract available.

7

Improving the value of public RNA-seq expression data by phenotype prediction.

Ellis SE, Collado-Torres L, Jaffe A, Leek JT. Ellis SE, et al. Nucleic Acids Res. 2018 May 18;46(9):e54. doi: 10.1093/nar/gky102. Nucleic Acids Res. 2018. PMID: 29514223 Free PMC article.

8

How to share data for collaboration.

Ellis SE, Leek JT. Ellis SE, et al. Am Stat. 2018;72(1):53-57. doi: 10.1080/00031305.2017.1375987. Epub 2018 Apr 24. Am Stat. 2018. PMID: 32981941 Free PMC article.

9

The role of mutations associated with familial neurodegenerative disorders on blood-brain barrier function in an iPSC model.

Katt ME, Mayo LN, Ellis SE, Mahairaki V, Rothstein JD, Cheng L, Searson PC. Katt ME, et al. Among authors: ellis se. Fluids Barriers CNS. 2019 Jul 15;16(1):20. doi: 10.1186/s12987-019-0139-4. Fluids Barriers CNS. 2019. PMID: 31303172 Free PMC article.

10

Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells.

Madugundu AK, Na CH, Nirujogi RS, Renuse S, Kim KP, Burns KH, Wilks C, Langmead B, Ellis SE, Collado-Torres L, Halushka MK, Kim MS, Pandey A. Madugundu AK, et al. Among authors: ellis se. Proteomics. 2019 Aug;19(15):e1800315. doi: 10.1002/pmic.201800315. Epub 2019 Jun 26. Proteomics. 2019. PMID: 30983154 Free PMC article.

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