Schwartz R - Search Results

1

Automated deconvolution of structured mixtures from heterogeneous tumor genomic data.

Roman T, Xie L, Schwartz R. Roman T, et al. Among authors: schwartz r. PLoS Comput Biol. 2017 Oct 23;13(10):e1005815. doi: 10.1371/journal.pcbi.1005815. eCollection 2017 Oct. PLoS Comput Biol. 2017. PMID: 29059177 Free PMC article.

2

Reconstructing tumor phylogenies from heterogeneous single-cell data.

Pennington G, Smith CA, Shackney S, Schwartz R. Pennington G, et al. Among authors: schwartz r. J Bioinform Comput Biol. 2007 Apr;5(2a):407-27. doi: 10.1142/s021972000700259x. J Bioinform Comput Biol. 2007. PMID: 17589968

3

Network-based inference of cancer progression from microarray data.

Park Y, Shackney S, Schwartz R. Park Y, et al. Among authors: schwartz r. IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun;6(2):200-12. doi: 10.1109/TCBB.2008.126. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19407345

4

Applying unmixing to gene expression data for tumor phylogeny inference.

Schwartz R, Shackney SE. Schwartz R, et al. BMC Bioinformatics. 2010 Jan 20;11:42. doi: 10.1186/1471-2105-11-42. BMC Bioinformatics. 2010. PMID: 20089185 Free PMC article.

5

Robust unmixing of tumor states in array comparative genomic hybridization data.

Tolliver D, Tsourakakis C, Subramanian A, Shackney S, Schwartz R. Tolliver D, et al. Among authors: schwartz r. Bioinformatics. 2010 Jun 15;26(12):i106-14. doi: 10.1093/bioinformatics/btq213. Bioinformatics. 2010. PMID: 20529894 Free PMC article.

6

Inference of tumor phylogenies from genomic assays on heterogeneous samples.

Subramanian A, Shackney S, Schwartz R. Subramanian A, et al. Among authors: schwartz r. J Biomed Biotechnol. 2012;2012:797812. doi: 10.1155/2012/797812. Epub 2012 May 13. J Biomed Biotechnol. 2012. PMID: 22654484 Free PMC article.

7

Surveying capsid assembly pathways through simulation-based data fitting.

Xie L, Smith GR, Feng X, Schwartz R. Xie L, et al. Among authors: schwartz r. Biophys J. 2012 Oct 3;103(7):1545-54. doi: 10.1016/j.bpj.2012.08.057. Epub 2012 Oct 2. Biophys J. 2012. PMID: 23062347 Free PMC article.

8

Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles.

Subramanian A, Shackney S, Schwartz R. Subramanian A, et al. Among authors: schwartz r. IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1422-31. doi: 10.1109/TCBB.2013.33. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24407301 Free PMC article.

9

Applying molecular crowding models to simulations of virus capsid assembly in vitro.

Smith GR, Xie L, Lee B, Schwartz R. Smith GR, et al. Among authors: schwartz r. Biophys J. 2014 Jan 7;106(1):310-20. doi: 10.1016/j.bpj.2013.11.022. Biophys J. 2014. PMID: 24411263 Free PMC article.

10

Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics.

Chowdhury SA, Shackney SE, Heselmeyer-Haddad K, Ried T, Schäffer AA, Schwartz R. Chowdhury SA, et al. Among authors: schwartz r. PLoS Comput Biol. 2014 Jul 31;10(7):e1003740. doi: 10.1371/journal.pcbi.1003740. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25078894 Free PMC article.

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