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Page 1
Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.
Marinier E, Zaheer R, Berry C, Weedmark KA, Domaratzki M, Mabon P, Knox NC, Reimer AR, Graham MR, Chui L, Patterson-Fortin L, Zhang J, Pagotto F, Farber J, Mahony J, Seyer K, Bekal S, Tremblay C, Isaac-Renton J, Prystajecky N, Chen J, Slade P, Van Domselaar G. Marinier E, et al. Among authors: reimer ar. Nucleic Acids Res. 2017 Oct 13;45(18):e159. doi: 10.1093/nar/gkx702. Nucleic Acids Res. 2017. PMID: 29048594 Free PMC article.
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.
Reimer AR, Van Domselaar G, Stroika S, Walker M, Kent H, Tarr C, Talkington D, Rowe L, Olsen-Rasmussen M, Frace M, Sammons S, Dahourou GA, Boncy J, Smith AM, Mabon P, Petkau A, Graham M, Gilmour MW, Gerner-Smidt P; V. cholerae Outbreak Genomics Task Force. Reimer AR, et al. Emerg Infect Dis. 2011 Nov;17(11):2113-21. doi: 10.3201/eid1711.110794. Emerg Infect Dis. 2011. PMID: 22099115 Free PMC article.
Comparative study of traditional flagellum serotyping and liquid chromatography-tandem mass spectrometry-based flagellum typing with clinical Escherichia coli isolates.
Cheng K, Sloan A, Peterson L, McCorrister S, Robinson A, Walker M, Drew T, McCrea J, Chui L, Wylie J, Bekal S, Reimer A, Westmacott G, Drebot M, Nadon C, Knox JD, Wang G. Cheng K, et al. J Clin Microbiol. 2014 Jun;52(6):2275-8. doi: 10.1128/JCM.00174-14. Epub 2014 Mar 26. J Clin Microbiol. 2014. PMID: 24671787 Free PMC article. No abstract available.
Usefulness of High-Quality Core Genome Single-Nucleotide Variant Analysis for Subtyping the Highly Clonal and the Most Prevalent Salmonella enterica Serovar Heidelberg Clone in the Context of Outbreak Investigations.
Bekal S, Berry C, Reimer AR, Van Domselaar G, Beaudry G, Fournier E, Doualla-Bell F, Levac E, Gaulin C, Ramsay D, Huot C, Walker M, Sieffert C, Tremblay C. Bekal S, et al. Among authors: reimer ar. J Clin Microbiol. 2016 Feb;54(2):289-95. doi: 10.1128/JCM.02200-15. Epub 2015 Nov 18. J Clin Microbiol. 2016. PMID: 26582830 Free PMC article.
Phenotypic H-Antigen Typing by Mass Spectrometry Combined with Genetic Typing of H Antigens, O Antigens, and Toxins by Whole-Genome Sequencing Enhances Identification of Escherichia coli Isolates.
Cheng K, Chui H, Domish L, Sloan A, Hernandez D, McCorrister S, Robinson A, Walker M, Peterson LA, Majcher M, Ratnam S, Haldane DJ, Bekal S, Wylie J, Chui L, Tyler S, Xu B, Reimer A, Nadon C, Knox JD, Wang G. Cheng K, et al. J Clin Microbiol. 2016 Aug;54(8):2162-8. doi: 10.1128/JCM.00422-16. Epub 2016 Jun 15. J Clin Microbiol. 2016. PMID: 27307455 Free PMC article.
Metagenomics: The Next Culture-Independent Game Changer.
Forbes JD, Knox NC, Ronholm J, Pagotto F, Reimer A. Forbes JD, et al. Front Microbiol. 2017 Jul 4;8:1069. doi: 10.3389/fmicb.2017.01069. eCollection 2017. Front Microbiol. 2017. PMID: 28725217 Free PMC article. Review.
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.
Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, Brinkman F, Graham M, Van Domselaar G. Petkau A, et al. Microb Genom. 2017 Jun 8;3(6):e000116. doi: 10.1099/mgen.0.000116. eCollection 2017 Jun 30. Microb Genom. 2017. PMID: 29026651 Free PMC article.
37 results