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Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.
Marinier E, Zaheer R, Berry C, Weedmark KA, Domaratzki M, Mabon P, Knox NC, Reimer AR, Graham MR, Chui L, Patterson-Fortin L, Zhang J, Pagotto F, Farber J, Mahony J, Seyer K, Bekal S, Tremblay C, Isaac-Renton J, Prystajecky N, Chen J, Slade P, Van Domselaar G. Marinier E, et al. Among authors: pagotto f. Nucleic Acids Res. 2017 Oct 13;45(18):e159. doi: 10.1093/nar/gkx702. Nucleic Acids Res. 2017. PMID: 29048594 Free PMC article.
Multi-Province Listeriosis Outbreak Linked to Contaminated Deli Meat Consumed Primarily in Institutional Settings, Canada, 2008.
Currie A, Farber JM, Nadon C, Sharma D, Whitfield Y, Gaulin C, Galanis E, Bekal S, Flint J, Tschetter L, Pagotto F, Lee B, Jamieson F, Badiani T, MacDonald D, Ellis A, May-Hadford J, McCormick R, Savelli C, Middleton D, Allen V, Tremblay FW, MacDougall L, Hoang L, Shyng S, Everett D, Chui L, Louie M, Bangura H, Levett PN, Wilkinson K, Wylie J, Reid J, Major B, Engel D, Douey D, Huszczynski G, Di Lecci J, Strazds J, Rousseau J, Ma K, Isaac L, Sierpinska U. Currie A, et al. Among authors: pagotto f. Foodborne Pathog Dis. 2015 Aug;12(8):645-52. doi: 10.1089/fpd.2015.1939. Epub 2015 Jun 3. Foodborne Pathog Dis. 2015. PMID: 26258258
Metagenomics: The Next Culture-Independent Game Changer.
Forbes JD, Knox NC, Ronholm J, Pagotto F, Reimer A. Forbes JD, et al. Among authors: pagotto f. Front Microbiol. 2017 Jul 4;8:1069. doi: 10.3389/fmicb.2017.01069. eCollection 2017. Front Microbiol. 2017. PMID: 28725217 Free PMC article. Review.
Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria.
Reimer A, Weedmark K, Petkau A, Peterson CL, Walker M, Knox N, Kent H, Mabon P, Berry C, Tyler S, Tschetter L, Jerome M, Allen V, Hoang L, Bekal S, Clark C, Nadon C, Van Domselaar G, Pagotto F, Graham M, Farber J, Gilmour M. Reimer A, et al. Among authors: pagotto f. Microb Genom. 2019 Jan;5(1):e000237. doi: 10.1099/mgen.0.000237. Epub 2019 Jan 16. Microb Genom. 2019. PMID: 30648944 Free PMC article.
79 results