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SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.
Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, Brinkman F, Graham M, Van Domselaar G. Petkau A, et al. Among authors: reimer a. Microb Genom. 2017 Jun 8;3(6):e000116. doi: 10.1099/mgen.0.000116. eCollection 2017 Jun 30. Microb Genom. 2017. PMID: 29026651 Free PMC article.
Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.
Reimer AR, Van Domselaar G, Stroika S, Walker M, Kent H, Tarr C, Talkington D, Rowe L, Olsen-Rasmussen M, Frace M, Sammons S, Dahourou GA, Boncy J, Smith AM, Mabon P, Petkau A, Graham M, Gilmour MW, Gerner-Smidt P; V. cholerae Outbreak Genomics Task Force. Reimer AR, et al. Emerg Infect Dis. 2011 Nov;17(11):2113-21. doi: 10.3201/eid1711.110794. Emerg Infect Dis. 2011. PMID: 22099115 Free PMC article.
Usefulness of High-Quality Core Genome Single-Nucleotide Variant Analysis for Subtyping the Highly Clonal and the Most Prevalent Salmonella enterica Serovar Heidelberg Clone in the Context of Outbreak Investigations.
Bekal S, Berry C, Reimer AR, Van Domselaar G, Beaudry G, Fournier E, Doualla-Bell F, Levac E, Gaulin C, Ramsay D, Huot C, Walker M, Sieffert C, Tremblay C. Bekal S, et al. Among authors: reimer ar. J Clin Microbiol. 2016 Feb;54(2):289-95. doi: 10.1128/JCM.02200-15. Epub 2015 Nov 18. J Clin Microbiol. 2016. PMID: 26582830 Free PMC article.
Phenotypic H-Antigen Typing by Mass Spectrometry Combined with Genetic Typing of H Antigens, O Antigens, and Toxins by Whole-Genome Sequencing Enhances Identification of Escherichia coli Isolates.
Cheng K, Chui H, Domish L, Sloan A, Hernandez D, McCorrister S, Robinson A, Walker M, Peterson LA, Majcher M, Ratnam S, Haldane DJ, Bekal S, Wylie J, Chui L, Tyler S, Xu B, Reimer A, Nadon C, Knox JD, Wang G. Cheng K, et al. Among authors: reimer a. J Clin Microbiol. 2016 Aug;54(8):2162-8. doi: 10.1128/JCM.00422-16. Epub 2016 Jun 15. J Clin Microbiol. 2016. PMID: 27307455 Free PMC article.
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S. Moura A, et al. Among authors: reimer a. Nat Microbiol. 2016 Oct 10;2:16185. doi: 10.1038/nmicrobiol.2016.185. Nat Microbiol. 2016. PMID: 27723724 Free PMC article.
The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.
Yachison CA, Yoshida C, Robertson J, Nash JHE, Kruczkiewicz P, Taboada EN, Walker M, Reimer A, Christianson S, Nichani A; PulseNet Canada Steering Committee; Nadon C. Yachison CA, et al. Among authors: reimer a. Front Microbiol. 2017 Jun 9;8:1044. doi: 10.3389/fmicb.2017.01044. eCollection 2017. Front Microbiol. 2017. PMID: 28649236 Free PMC article.
Metagenomics: The Next Culture-Independent Game Changer.
Forbes JD, Knox NC, Ronholm J, Pagotto F, Reimer A. Forbes JD, et al. Among authors: reimer a. Front Microbiol. 2017 Jul 4;8:1069. doi: 10.3389/fmicb.2017.01069. eCollection 2017. Front Microbiol. 2017. PMID: 28725217 Free PMC article. Review.
349 results