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Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.
Yamashita K, Kuwabara N, Nakane T, Murai T, Mizohata E, Sugahara M, Pan D, Masuda T, Suzuki M, Sato T, Kodan A, Yamaguchi T, Nango E, Tanaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Manya H, Endo T, Kato R, Senda T, Kato H, Iwata S, Ago H, Yamamoto M, Yumoto F, Nakatsu T. Yamashita K, et al. Among authors: yamamoto m. IUCrJ. 2017 Aug 8;4(Pt 5):639-647. doi: 10.1107/S2052252517008557. eCollection 2017 Sep 1. IUCrJ. 2017. PMID: 28989719 Free PMC article.
High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center.
Sugahara M, Asada Y, Shimizu K, Yamamoto H, Lokanath NK, Mizutani H, Bagautdinov B, Matsuura Y, Taketa M, Kageyama Y, Ono N, Morikawa Y, Tanaka Y, Shimada H, Nakamoto T, Sugahara M, Yamamoto M, Kunishima N. Sugahara M, et al. Among authors: yamamoto h, yamamoto m. J Struct Funct Genomics. 2008 Dec;9(1-4):21-8. doi: 10.1007/s10969-008-9042-y. Epub 2008 Aug 2. J Struct Funct Genomics. 2008. PMID: 18677553
The catalytic architecture of leukotriene C4 synthase with two arginine residues.
Saino H, Ukita Y, Ago H, Irikura D, Nisawa A, Ueno G, Yamamoto M, Kanaoka Y, Lam BK, Austen KF, Miyano M. Saino H, et al. Among authors: yamamoto m. J Biol Chem. 2011 May 6;286(18):16392-401. doi: 10.1074/jbc.M110.150177. Epub 2011 Mar 16. J Biol Chem. 2011. PMID: 21454538 Free PMC article.
KOTOBUKI-1 apparatus for cryogenic coherent X-ray diffraction imaging.
Nakasako M, Takayama Y, Oroguchi T, Sekiguchi Y, Kobayashi A, Shirahama K, Yamamoto M, Hikima T, Yonekura K, Maki-Yonekura S, Kohmura Y, Inubushi Y, Takahashi Y, Suzuki A, Matsunaga S, Inui Y, Tono K, Kameshima T, Joti Y, Hoshi T. Nakasako M, et al. Among authors: yamamoto m. Rev Sci Instrum. 2013 Sep;84(9):093705. doi: 10.1063/1.4822123. Rev Sci Instrum. 2013. PMID: 24089834
Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Hirata K, Shinzawa-Itoh K, Yano N, Takemura S, Kato K, Hatanaka M, Muramoto K, Kawahara T, Tsukihara T, Yamashita E, Tono K, Ueno G, Hikima T, Murakami H, Inubushi Y, Yabashi M, Ishikawa T, Yamamoto M, Ogura T, Sugimoto H, Shen JR, Yoshikawa S, Ago H. Hirata K, et al. Among authors: yamamoto m. Nat Methods. 2014 Jul;11(7):734-6. doi: 10.1038/nmeth.2962. Epub 2014 May 11. Nat Methods. 2014. PMID: 24813624
Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses.
Xu R, Jiang H, Song C, Rodriguez JA, Huang Z, Chen CC, Nam D, Park J, Gallagher-Jones M, Kim S, Kim S, Suzuki A, Takayama Y, Oroguchi T, Takahashi Y, Fan J, Zou Y, Hatsui T, Inubushi Y, Kameshima T, Yonekura K, Tono K, Togashi T, Sato T, Yamamoto M, Nakasako M, Yabashi M, Ishikawa T, Miao J. Xu R, et al. Among authors: yamamoto m. Nat Commun. 2014 Jun 5;5:4061. doi: 10.1038/ncomms5061. Nat Commun. 2014. PMID: 24898682 Free article.
An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Yamashita K, Pan D, Okuda T, Sugahara M, Kodan A, Yamaguchi T, Murai T, Gomi K, Kajiyama N, Mizohata E, Suzuki M, Nango E, Tono K, Joti Y, Kameshima T, Park J, Song C, Hatsui T, Yabashi M, Iwata S, Kato H, Ago H, Yamamoto M, Nakatsu T. Yamashita K, et al. Among authors: yamamoto m. Sci Rep. 2015 Sep 11;5:14017. doi: 10.1038/srep14017. Sci Rep. 2015. PMID: 26360462 Free PMC article.
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