Fernández-Recio J - Search Results

1

LightDock: a new multi-scale approach to protein-protein docking.

Jiménez-García B, Roel-Touris J, Romero-Durana M, Vidal M, Jiménez-González D, Fernández-Recio J. Jiménez-García B, et al. Bioinformatics. 2018 Jan 1;34(1):49-55. doi: 10.1093/bioinformatics/btx555. Bioinformatics. 2018. PMID: 28968719

2

Prediction and scoring of docking poses with pyDock.

Grosdidier S, Pons C, Solernou A, Fernández-Recio J. Grosdidier S, et al. Proteins. 2007 Dec 1;69(4):852-8. doi: 10.1002/prot.21796. Proteins. 2007. PMID: 17876821

3

Identification of hot-spot residues in protein-protein interactions by computational docking.

Grosdidier S, Fernández-Recio J. Grosdidier S, et al. BMC Bioinformatics. 2008 Oct 21;9:447. doi: 10.1186/1471-2105-9-447. BMC Bioinformatics. 2008. PMID: 18939967 Free PMC article.

4

FRODOCK: a new approach for fast rotational protein-protein docking.

Garzon JI, Lopéz-Blanco JR, Pons C, Kovacs J, Abagyan R, Fernandez-Recio J, Chacon P. Garzon JI, et al. Bioinformatics. 2009 Oct 1;25(19):2544-51. doi: 10.1093/bioinformatics/btp447. Epub 2009 Jul 20. Bioinformatics. 2009. PMID: 19620099 Free PMC article.

5

Pushing structural information into the yeast interactome by high-throughput protein docking experiments.

Mosca R, Pons C, Fernández-Recio J, Aloy P. Mosca R, et al. PLoS Comput Biol. 2009 Aug;5(8):e1000490. doi: 10.1371/journal.pcbi.1000490. Epub 2009 Aug 28. PLoS Comput Biol. 2009. PMID: 19714207 Free PMC article.

6

Present and future challenges and limitations in protein-protein docking.

Pons C, Grosdidier S, Solernou A, Pérez-Cano L, Fernández-Recio J. Pons C, et al. Proteins. 2010 Jan;78(1):95-108. doi: 10.1002/prot.22564. Proteins. 2010. PMID: 19731373

7

Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials.

Pérez-Cano L, Solernou A, Pons C, Fernández-Recio J. Pérez-Cano L, et al. Pac Symp Biocomput. 2010:293-301. doi: 10.1142/9789814295291_0031. Pac Symp Biocomput. 2010. PMID: 19908381 Free article.

8

Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation.

Solernou A, Fernandez-Recio J. Solernou A, et al. BMC Bioinformatics. 2010 Jun 28;11:352. doi: 10.1186/1471-2105-11-352. BMC Bioinformatics. 2010. PMID: 20584304 Free PMC article.

9

Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.

Pons C, Solernou A, Perez-Cano L, Grosdidier S, Fernandez-Recio J. Pons C, et al. Proteins. 2010 Nov 15;78(15):3182-8. doi: 10.1002/prot.22773. Proteins. 2010. PMID: 20602351

10

Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data.

Pons C, D'Abramo M, Svergun DI, Orozco M, Bernadó P, Fernández-Recio J. Pons C, et al. J Mol Biol. 2010 Oct 22;403(2):217-30. doi: 10.1016/j.jmb.2010.08.029. Epub 2010 Sep 8. J Mol Biol. 2010. PMID: 20804770

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