Andrade-Navarro MA - Search Results

1

Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate.

Corwin T, Woodsmith J, Apelt F, Fontaine JF, Meierhofer D, Helmuth J, Grossmann A, Andrade-Navarro MA, Ballif BA, Stelzl U. Corwin T, et al. Cell Syst. 2017 Aug 23;5(2):128-139.e4. doi: 10.1016/j.cels.2017.08.001. Cell Syst. 2017. PMID: 28837810 Free PMC article.

2

MedlineRanker: flexible ranking of biomedical literature.

Fontaine JF, Barbosa-Silva A, Schaefer M, Huska MR, Muro EM, Andrade-Navarro MA. Fontaine JF, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W141-6. doi: 10.1093/nar/gkp353. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429696 Free PMC article.

3

LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships.

Barbosa-Silva A, Soldatos TG, Magalhães IL, Pavlopoulos GA, Fontaine JF, Andrade-Navarro MA, Schneider R, Ortega JM. Barbosa-Silva A, et al. BMC Bioinformatics. 2010 Feb 1;11:70. doi: 10.1186/1471-2105-11-70. BMC Bioinformatics. 2010. PMID: 20122157 Free PMC article.

4

Génie: literature-based gene prioritization at multi genomic scale.

Fontaine JF, Priller F, Barbosa-Silva A, Andrade-Navarro MA. Fontaine JF, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W455-61. doi: 10.1093/nar/gkr246. Epub 2011 May 23. Nucleic Acids Res. 2011. PMID: 21609954 Free PMC article.

5

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.

Lopes TJ, Schaefer M, Shoemaker J, Matsuoka Y, Fontaine JF, Neumann G, Andrade-Navarro MA, Kawaoka Y, Kitano H. Lopes TJ, et al. Bioinformatics. 2011 Sep 1;27(17):2414-21. doi: 10.1093/bioinformatics/btr414. Epub 2011 Jul 28. Bioinformatics. 2011. PMID: 21798963

6

A directed protein interaction network for investigating intracellular signal transduction.

Vinayagam A, Stelzl U, Foulle R, Plassmann S, Zenkner M, Timm J, Assmus HE, Andrade-Navarro MA, Wanker EE. Vinayagam A, et al. Sci Signal. 2011 Sep 6;4(189):rs8. doi: 10.1126/scisignal.2001699. Sci Signal. 2011. PMID: 21900206

7

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.

Barbosa-Silva A, Fontaine JF, Donnard ER, Stussi F, Ortega JM, Andrade-Navarro MA. Barbosa-Silva A, et al. BMC Bioinformatics. 2011 Nov 9;12:435. doi: 10.1186/1471-2105-12-435. BMC Bioinformatics. 2011. PMID: 22070195 Free PMC article.

8

HIPPIE: Integrating protein interaction networks with experiment based quality scores.

Schaefer MH, Fontaine JF, Vinayagam A, Porras P, Wanker EE, Andrade-Navarro MA. Schaefer MH, et al. PLoS One. 2012;7(2):e31826. doi: 10.1371/journal.pone.0031826. Epub 2012 Feb 14. PLoS One. 2012. PMID: 22348130 Free PMC article.

9

Development and application of a DNA microarray-based yeast two-hybrid system.

Suter B, Fontaine JF, Yildirimman R, Raskó T, Schaefer MH, Rasche A, Porras P, Vázquez-Álvarez BM, Russ J, Rau K, Foulle R, Zenkner M, Saar K, Herwig R, Andrade-Navarro MA, Wanker EE. Suter B, et al. Nucleic Acids Res. 2013 Feb 1;41(3):1496-507. doi: 10.1093/nar/gks1329. Epub 2012 Dec 28. Nucleic Acids Res. 2013. PMID: 23275563 Free PMC article.

10

Adding protein context to the human protein-protein interaction network to reveal meaningful interactions.

Schaefer MH, Lopes TJ, Mah N, Shoemaker JE, Matsuoka Y, Fontaine JF, Louis-Jeune C, Eisfeld AJ, Neumann G, Perez-Iratxeta C, Kawaoka Y, Kitano H, Andrade-Navarro MA. Schaefer MH, et al. PLoS Comput Biol. 2013;9(1):e1002860. doi: 10.1371/journal.pcbi.1002860. Epub 2013 Jan 3. PLoS Comput Biol. 2013. PMID: 23300433 Free PMC article.

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