Kamisetty H - Search Results

1

Origins of coevolution between residues distant in protein 3D structures.

Anishchenko I, Ovchinnikov S, Kamisetty H, Baker D. Anishchenko I, et al. Among authors: kamisetty h. Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9122-9127. doi: 10.1073/pnas.1702664114. Epub 2017 Aug 7. Proc Natl Acad Sci U S A. 2017. PMID: 28784799 Free PMC article.

2

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

Kamisetty H, Ovchinnikov S, Baker D. Kamisetty H, et al. Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15674-9. doi: 10.1073/pnas.1314045110. Epub 2013 Sep 5. Proc Natl Acad Sci U S A. 2013. PMID: 24009338 Free PMC article.

3

Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.

Ovchinnikov S, Kamisetty H, Baker D. Ovchinnikov S, et al. Among authors: kamisetty h. Elife. 2014 May 1;3:e02030. doi: 10.7554/eLife.02030. Elife. 2014. PMID: 24842992 Free PMC article.

4

Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4.

Antala S, Ovchinnikov S, Kamisetty H, Baker D, Dempski RE. Antala S, et al. Among authors: kamisetty h. J Biol Chem. 2015 Jul 17;290(29):17796-17805. doi: 10.1074/jbc.M114.617613. Epub 2015 May 13. J Biol Chem. 2015. PMID: 25971965 Free PMC article.

5

Large-scale determination of previously unsolved protein structures using evolutionary information.

Ovchinnikov S, Kinch L, Park H, Liao Y, Pei J, Kim DE, Kamisetty H, Grishin NV, Baker D. Ovchinnikov S, et al. Among authors: kamisetty h. Elife. 2015 Sep 3;4:e09248. doi: 10.7554/eLife.09248. Elife. 2015. PMID: 26335199 Free PMC article.

6

Protein structure determination using metagenome sequence data.

Ovchinnikov S, Park H, Varghese N, Huang PS, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D. Ovchinnikov S, et al. Among authors: kamisetty h. Science. 2017 Jan 20;355(6322):294-298. doi: 10.1126/science.aah4043. Science. 2017. PMID: 28104891 Free PMC article.

7

Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing.

Whitehead TA, Chevalier A, Song Y, Dreyfus C, Fleishman SJ, De Mattos C, Myers CA, Kamisetty H, Blair P, Wilson IA, Baker D. Whitehead TA, et al. Among authors: kamisetty h. Nat Biotechnol. 2012 May 27;30(6):543-8. doi: 10.1038/nbt.2214. Nat Biotechnol. 2012. PMID: 22634563 Free PMC article.

8

Learning sequence determinants of protein:protein interaction specificity with sparse graphical models.

Kamisetty H, Ghosh B, Langmead CJ, Bailey-Kellogg C. Kamisetty H, et al. J Comput Biol. 2015 Jun;22(6):474-86. doi: 10.1089/cmb.2014.0289. Epub 2015 May 14. J Comput Biol. 2015. PMID: 25973864 Free PMC article.

9

Accounting for conformational entropy in predicting binding free energies of protein-protein interactions.

Kamisetty H, Ramanathan A, Bailey-Kellogg C, Langmead CJ. Kamisetty H, et al. Proteins. 2011 Feb;79(2):444-62. doi: 10.1002/prot.22894. Proteins. 2011. PMID: 21120864

10

Learning generative models for protein fold families.

Balakrishnan S, Kamisetty H, Carbonell JG, Lee SI, Langmead CJ. Balakrishnan S, et al. Among authors: kamisetty h. Proteins. 2011 Apr;79(4):1061-78. doi: 10.1002/prot.22934. Epub 2011 Jan 25. Proteins. 2011. PMID: 21268112

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