Izmailov SA - Search Results

1

Slow conformational exchange and overall rocking motion in ubiquitin protein crystals.

Kurauskas V, Izmailov SA, Rogacheva ON, Hessel A, Ayala I, Woodhouse J, Shilova A, Xue Y, Yuwen T, Coquelle N, Colletier JP, Skrynnikov NR, Schanda P. Kurauskas V, et al. Among authors: izmailov sa. Nat Commun. 2017 Jul 27;8(1):145. doi: 10.1038/s41467-017-00165-8. Nat Commun. 2017. PMID: 28747759 Free PMC article.

2

Simple MD-based model for oxidative folding of peptides and proteins.

Izmailov SA, Podkorytov IS, Skrynnikov NR. Izmailov SA, et al. Sci Rep. 2017 Aug 24;7(1):9293. doi: 10.1038/s41598-017-09229-7. Sci Rep. 2017. PMID: 28839177 Free PMC article.

3

Onset of disorder and protein aggregation due to oxidation-induced intermolecular disulfide bonds: case study of RRM2 domain from TDP-43.

Rabdano SO, Izmailov SA, Luzik DA, Groves A, Podkorytov IS, Skrynnikov NR. Rabdano SO, et al. Among authors: izmailov sa. Sci Rep. 2017 Sep 11;7(1):11161. doi: 10.1038/s41598-017-10574-w. Sci Rep. 2017. PMID: 28894122 Free PMC article.

4

A new structural arrangement in proteins involving lysine NH₃⁺ group and carbonyl.

Rogacheva ON, Izmailov SA, Slipchenko LV, Skrynnikov NR. Rogacheva ON, et al. Among authors: izmailov sa. Sci Rep. 2017 Nov 27;7(1):16402. doi: 10.1038/s41598-017-16584-y. Sci Rep. 2017. PMID: 29180642 Free PMC article.

5

What Drives ¹⁵N Spin Relaxation in Disordered Proteins? Combined NMR/MD Study of the H4 Histone Tail.

Kämpf K, Izmailov SA, Rabdano SO, Groves AT, Podkorytov IS, Skrynnikov NR. Kämpf K, et al. Among authors: izmailov sa. Biophys J. 2018 Dec 18;115(12):2348-2367. doi: 10.1016/j.bpj.2018.11.017. Epub 2018 Nov 20. Biophys J. 2018. PMID: 30527335 Free PMC article.

6

Molecular Dynamics model of peptide-protein conjugation: case study of covalent complex between Sos1 peptide and N-terminal SH3 domain from Grb2.

Luzik DA, Rogacheva ON, Izmailov SA, Indeykina MI, Kononikhin AS, Skrynnikov NR. Luzik DA, et al. Among authors: izmailov sa. Sci Rep. 2019 Dec 27;9(1):20219. doi: 10.1038/s41598-019-56078-7. Sci Rep. 2019. PMID: 31882608 Free PMC article.

7

Structural and dynamic origins of ESR lineshapes in spin-labeled GB1 domain: the insights from spin dynamics simulations based on long MD trajectories.

Izmailov SA, Rabdano SO, Hasanbasri Z, Podkorytov IS, Saxena S, Skrynnikov NR. Izmailov SA, et al. Sci Rep. 2020 Jan 22;10(1):957. doi: 10.1038/s41598-019-56750-y. Sci Rep. 2020. PMID: 31969574 Free PMC article.

8

Histone H4 Tails in Nucleosomes: a Fuzzy Interaction with DNA.

Rabdano SO, Shannon MD, Izmailov SA, Gonzalez Salguero N, Zandian M, Purusottam RN, Poirier MG, Skrynnikov NR, Jaroniec CP. Rabdano SO, et al. Among authors: izmailov sa. Angew Chem Int Ed Engl. 2021 Mar 15;60(12):6480-6487. doi: 10.1002/anie.202012046. Epub 2021 Feb 12. Angew Chem Int Ed Engl. 2021. PMID: 33522067 Free PMC article.

9

Using NMR diffusion data to validate MD models of disordered proteins: Test case of N-terminal tail of histone H4.

Lebedenko OO, Salikov VA, Izmailov SA, Podkorytov IS, Skrynnikov NR. Lebedenko OO, et al. Among authors: izmailov sa. Biophys J. 2024 Jan 2;123(1):80-100. doi: 10.1016/j.bpj.2023.11.020. Epub 2023 Nov 20. Biophys J. 2024. PMID: 37990496 Free PMC article.

10

X-ray Crystallography Module in MD Simulation Program Amber 2023. Refining the Models of Protein Crystals.

Mikhailovskii O, Izmailov SA, Xue Y, Case DA, Skrynnikov NR. Mikhailovskii O, et al. Among authors: izmailov sa. J Chem Inf Model. 2024 Jan 8;64(1):18-25. doi: 10.1021/acs.jcim.3c01531. Epub 2023 Dec 26. J Chem Inf Model. 2024. PMID: 38147516

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