Vijay-Shanker K - Search Results

1

Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology.

Ross KE, Natale DA, Arighi C, Chen SC, Huang H, Li G, Ren J, Wang M, Vijay-Shanker K, Wu CH. Ross KE, et al. CEUR Workshop Proc. 2016 Aug;1747:http://ceur-ws.org/Vol-1747/BIT103_ICBO2016.pdf. Epub 2016 Nov 29. CEUR Workshop Proc. 2016. PMID: 28706471 Free PMC article.

2

Literature mining and database annotation of protein phosphorylation using a rule-based system.

Hu ZZ, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH. Hu ZZ, et al. Bioinformatics. 2005 Jun 1;21(11):2759-65. doi: 10.1093/bioinformatics/bti390. Epub 2005 Apr 6. Bioinformatics. 2005. PMID: 15814565

3

An online literature mining tool for protein phosphorylation.

Yuan X, Hu ZZ, Wu HT, Torii M, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH. Yuan X, et al. Bioinformatics. 2006 Jul 1;22(13):1668-9. doi: 10.1093/bioinformatics/btl159. Epub 2006 Apr 27. Bioinformatics. 2006. PMID: 16644790

4

The eFIP system for text mining of protein interaction networks of phosphorylated proteins.

Tudor CO, Arighi CN, Wang Q, Wu CH, Vijay-Shanker K. Tudor CO, et al. Database (Oxford). 2012 Dec 5;2012:bas044. doi: 10.1093/database/bas044. Print 2012. Database (Oxford). 2012. PMID: 23221174 Free PMC article.

5

A framework for biomedical figure segmentation towards image-based document retrieval.

Lopez LD, Yu J, Arighi C, Tudor CO, Torii M, Huang H, Vijay-Shanker K, Wu C. Lopez LD, et al. BMC Syst Biol. 2013;7 Suppl 4(Suppl 4):S8. doi: 10.1186/1752-0509-7-S4-S8. Epub 2013 Oct 23. BMC Syst Biol. 2013. PMID: 24565394 Free PMC article.

6

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.

Peng Y, Tudor CO, Torii M, Wu CH, Vijay-Shanker K. Peng Y, et al. Database (Oxford). 2014 May 21;2014:bau038. doi: 10.1093/database/bau038. Print 2014. Database (Oxford). 2014. PMID: 24850848 Free PMC article.

7

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.

Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH. Torii M, et al. Database (Oxford). 2014 Aug 13;2014:bau081. doi: 10.1093/database/bau081. Print 2014. Database (Oxford). 2014. PMID: 25122463 Free PMC article.

8

A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems.

Peng Y, Torii M, Wu CH, Vijay-Shanker K. Peng Y, et al. BMC Bioinformatics. 2014 Aug 23;15(1):285. doi: 10.1186/1471-2105-15-285. BMC Bioinformatics. 2014. PMID: 25149151 Free PMC article.

9

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.

Tudor CO, Ross KE, Li G, Vijay-Shanker K, Wu CH, Arighi CN. Tudor CO, et al. Database (Oxford). 2015 Mar 31;2015:bav020. doi: 10.1093/database/bav020. Print 2015. Database (Oxford). 2015. PMID: 25833953 Free PMC article.

10

pGenN, a gene normalization tool for plant genes and proteins in scientific literature.

Ding R, Arighi CN, Lee JY, Wu CH, Vijay-Shanker K. Ding R, et al. PLoS One. 2015 Aug 10;10(8):e0135305. doi: 10.1371/journal.pone.0135305. eCollection 2015. PLoS One. 2015. PMID: 26258475 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

38 results

Search Page

Filters