Hornshøj H - Search Results

1

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate.

Juul M, Bertl J, Guo Q, Nielsen MM, Świtnicki M, Hornshøj H, Madsen T, Hobolth A, Pedersen JS. Juul M, et al. Among authors: hornshoj h. Elife. 2017 Mar 31;6:e21778. doi: 10.7554/eLife.21778. Elife. 2017. PMID: 28362259 Free PMC article.

2

Comparative analysis of protein coding sequences from human, mouse and the domesticated pig.

Jørgensen FG, Hobolth A, Hornshøj H, Bendixen C, Fredholm M, Schierup MH. Jørgensen FG, et al. Among authors: hornshoj h. BMC Biol. 2005 Jan 28;3:2. doi: 10.1186/1741-7007-3-2. BMC Biol. 2005. PMID: 15679890 Free PMC article.

3

Mutational context and diverse clonal development in early and late bladder cancer.

Nordentoft I, Lamy P, Birkenkamp-Demtröder K, Shumansky K, Vang S, Hornshøj H, Juul M, Villesen P, Hedegaard J, Roth A, Thorsen K, Høyer S, Borre M, Reinert T, Fristrup N, Dyrskjøt L, Shah S, Pedersen JS, Ørntoft TF. Nordentoft I, et al. Among authors: hornshoj h. Cell Rep. 2014 Jun 12;7(5):1649-1663. doi: 10.1016/j.celrep.2014.04.038. Epub 2014 May 15. Cell Rep. 2014. PMID: 24835989 Free article.

4

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival.

Hornshøj H, Nielsen MM, Sinnott-Armstrong NA, Świtnicki MP, Juul M, Madsen T, Sallari R, Kellis M, Ørntoft T, Hobolth A, Pedersen JS. Hornshøj H, et al. NPJ Genom Med. 2018 Jan 11;3:1. doi: 10.1038/s41525-017-0040-5. eCollection 2018. NPJ Genom Med. 2018. PMID: 29354286 Free PMC article.

5

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data.

Bertl J, Guo Q, Juul M, Besenbacher S, Nielsen MM, Hornshøj H, Pedersen JS, Hobolth A. Bertl J, et al. Among authors: hornshoj h. BMC Bioinformatics. 2018 Apr 19;19(1):147. doi: 10.1186/s12859-018-2141-2. BMC Bioinformatics. 2018. PMID: 29673314 Free PMC article.

6

DNA hypermethylation and differential gene expression associated with Klinefelter syndrome.

Skakkebæk A, Nielsen MM, Trolle C, Vang S, Hornshøj H, Hedegaard J, Wallentin M, Bojesen A, Hertz JM, Fedder J, Østergaard JR, Pedersen JS, Gravholt CH. Skakkebæk A, et al. Among authors: hornshoj h. Sci Rep. 2018 Sep 13;8(1):13740. doi: 10.1038/s41598-018-31780-0. Sci Rep. 2018. PMID: 30213969 Free PMC article.

7

Combined burden and functional impact tests for cancer driver discovery using DriverPower.

Shuai S; PCAWG Drivers and Functional Interpretation Working Group; Gallinger S, Stein LD; PCAWG Consortium. Shuai S, et al. Nat Commun. 2020 Feb 5;11(1):734. doi: 10.1038/s41467-019-13929-1. Nat Commun. 2020. PMID: 32024818 Free PMC article.

8

Integrative pathway enrichment analysis of multivariate omics data.

Paczkowska M, Barenboim J, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC; PCAWG Drivers and Functional Interpretation Working Group; Reimand J; PCAWG Consortium. Paczkowska M, et al. Nat Commun. 2020 Feb 5;11(1):735. doi: 10.1038/s41467-019-13983-9. Nat Commun. 2020. PMID: 32024846 Free PMC article.

9

Pathway and network analysis of more than 2500 whole cancer genomes.

Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M, Kahraman A, Pulido-Tamayo S, Barenboim J, Wadi L, Dhingra P, Shrestha R, Getz G, Lawrence MS, Pedersen JS, Rubin MA, Wheeler DA, Brunak S, Izarzugaza JMG, Khurana E, Marchal K, von Mering C, Sahinalp SC, Valencia A; PCAWG Drivers and Functional Interpretation Working Group; Reimand J, Stuart JM, Raphael BJ; PCAWG Consortium. Reyna MA, et al. Nat Commun. 2020 Feb 5;11(1):729. doi: 10.1038/s41467-020-14367-0. Nat Commun. 2020. PMID: 32024854 Free PMC article.

10

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis.

Carlevaro-Fita J, Lanzós A, Feuerbach L, Hong C, Mas-Ponte D, Pedersen JS; PCAWG Drivers and Functional Interpretation Group; Johnson R; PCAWG Consortium. Carlevaro-Fita J, et al. Commun Biol. 2020 Feb 5;3(1):56. doi: 10.1038/s42003-019-0741-7. Commun Biol. 2020. PMID: 32024996 Free PMC article.

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