Berry CC - Search Results

1

INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular Genomes.

Sherman E, Nobles C, Berry CC, Six E, Wu Y, Dryga A, Malani N, Male F, Reddy S, Bailey A, Bittinger K, Everett JK, Caccavelli L, Drake MJ, Bates P, Hacein-Bey-Abina S, Cavazzana M, Bushman FD. Sherman E, et al. Among authors: berry cc. Mol Ther Methods Clin Dev. 2016 Dec 18;4:39-49. doi: 10.1016/j.omtm.2016.11.002. eCollection 2017 Mar 17. Mol Ther Methods Clin Dev. 2016. PMID: 28344990 Free PMC article.

2

HIV-1 integration in the human genome favors active genes and local hotspots.

Schröder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F. Schröder AR, et al. Cell. 2002 Aug 23;110(4):521-9. doi: 10.1016/s0092-8674(02)00864-4. Cell. 2002. PMID: 12202041 Free article.

3

Global analysis of cellular transcription following infection with an HIV-based vector.

Mitchell R, Chiang CY, Berry C, Bushman F. Mitchell R, et al. Mol Ther. 2003 Oct;8(4):674-87. doi: 10.1016/s1525-0016(03)00215-6. Mol Ther. 2003. PMID: 14529841 Free article.

4

Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences.

Mitchell RS, Beitzel BF, Schroder AR, Shinn P, Chen H, Berry CC, Ecker JR, Bushman FD. Mitchell RS, et al. Among authors: berry cc. PLoS Biol. 2004 Aug;2(8):E234. doi: 10.1371/journal.pbio.0020234. Epub 2004 Aug 17. PLoS Biol. 2004. PMID: 15314653 Free PMC article.

5

Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription.

Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD. Lewinski MK, et al. Among authors: berry cc. J Virol. 2005 Jun;79(11):6610-9. doi: 10.1128/JVI.79.11.6610-6619.2005. J Virol. 2005. PMID: 15890899 Free PMC article.

6

Retroviral DNA integration: viral and cellular determinants of target-site selection.

Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S, Berry CC, Ecker JR, Bushman FD. Lewinski MK, et al. Among authors: berry cc. PLoS Pathog. 2006 Jun;2(6):e60. doi: 10.1371/journal.ppat.0020060. Epub 2006 Jun 23. PLoS Pathog. 2006. PMID: 16789841 Free PMC article.

7

Selection of target sites for mobile DNA integration in the human genome.

Berry C, Hannenhalli S, Leipzig J, Bushman FD. Berry C, et al. PLoS Comput Biol. 2006 Nov 24;2(11):e157. doi: 10.1371/journal.pcbi.0020157. PLoS Comput Biol. 2006. PMID: 17166054 Free PMC article.

8

HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications.

Wang GP, Ciuffi A, Leipzig J, Berry CC, Bushman FD. Wang GP, et al. Among authors: berry cc. Genome Res. 2007 Aug;17(8):1186-94. doi: 10.1101/gr.6286907. Epub 2007 Jun 1. Genome Res. 2007. PMID: 17545577 Free PMC article.

9

Role of PSIP1/LEDGF/p75 in lentiviral infectivity and integration targeting.

Marshall HM, Ronen K, Berry C, Llano M, Sutherland H, Saenz D, Bickmore W, Poeschla E, Bushman FD. Marshall HM, et al. PLoS One. 2007 Dec 19;2(12):e1340. doi: 10.1371/journal.pone.0001340. PLoS One. 2007. PMID: 18092005 Free PMC article.

10

DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer.

Wang GP, Garrigue A, Ciuffi A, Ronen K, Leipzig J, Berry C, Lagresle-Peyrou C, Benjelloun F, Hacein-Bey-Abina S, Fischer A, Cavazzana-Calvo M, Bushman FD. Wang GP, et al. Nucleic Acids Res. 2008 May;36(9):e49. doi: 10.1093/nar/gkn125. Epub 2008 Apr 14. Nucleic Acids Res. 2008. PMID: 18411205 Free PMC article.

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