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BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.
Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA. Gorgolewski KJ, et al. Among authors: yarkoni t. PLoS Comput Biol. 2017 Mar 9;13(3):e1005209. doi: 10.1371/journal.pcbi.1005209. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28278228 Free PMC article.
Analysis of task-based functional MRI data preprocessed with fMRIPrep.
Esteban O, Ciric R, Finc K, Blair RW, Markiewicz CJ, Moodie CA, Kent JD, Goncalves M, DuPre E, Gomez DEP, Ye Z, Salo T, Valabregue R, Amlien IK, Liem F, Jacoby N, Stojić H, Cieslak M, Urchs S, Halchenko YO, Ghosh SS, De La Vega A, Yarkoni T, Wright J, Thompson WH, Poldrack RA, Gorgolewski KJ. Esteban O, et al. Among authors: yarkoni t. Nat Protoc. 2020 Jul;15(7):2186-2202. doi: 10.1038/s41596-020-0327-3. Epub 2020 Jun 8. Nat Protoc. 2020. PMID: 32514178 Free PMC article.
Predicting future cognitive decline from non-brain and multimodal brain imaging data in healthy and pathological aging.
Hebling Vieira B, Liem F, Dadi K, Engemann DA, Gramfort A, Bellec P, Craddock RC, Damoiseaux JS, Steele CJ, Yarkoni T, Langer N, Margulies DS, Varoquaux G. Hebling Vieira B, et al. Among authors: yarkoni t. Neurobiol Aging. 2022 Oct;118:55-65. doi: 10.1016/j.neurobiolaging.2022.06.008. Epub 2022 Jun 28. Neurobiol Aging. 2022. PMID: 35878565 Free PMC article.
Scanning the horizon: towards transparent and reproducible neuroimaging research.
Poldrack RA, Baker CI, Durnez J, Gorgolewski KJ, Matthews PM, Munafò MR, Nichols TE, Poline JB, Vul E, Yarkoni T. Poldrack RA, et al. Among authors: yarkoni t. Nat Rev Neurosci. 2017 Feb;18(2):115-126. doi: 10.1038/nrn.2016.167. Epub 2017 Jan 5. Nat Rev Neurosci. 2017. PMID: 28053326 Free PMC article. Review.
NeuroQuery, comprehensive meta-analysis of human brain mapping.
Dockès J, Poldrack RA, Primet R, Gözükan H, Yarkoni T, Suchanek F, Thirion B, Varoquaux G. Dockès J, et al. Among authors: yarkoni t. Elife. 2020 Mar 4;9:e53385. doi: 10.7554/eLife.53385. Elife. 2020. PMID: 32129761 Free PMC article.
NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain.
Gorgolewski KJ, Varoquaux G, Rivera G, Schwartz Y, Sochat VV, Ghosh SS, Maumet C, Nichols TE, Poline JB, Yarkoni T, Margulies DS, Poldrack RA. Gorgolewski KJ, et al. Among authors: yarkoni t. Neuroimage. 2016 Jan 1;124(Pt B):1242-1244. doi: 10.1016/j.neuroimage.2015.04.016. Epub 2015 Apr 11. Neuroimage. 2016. PMID: 25869863 Free PMC article.
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