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Page 1
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.
Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, Zhou Y, Sun J, Crisà A, Ponce de León FA, Schwartz JC, Hammond JA, Waldbieser GC, Schroeder SG, Liu GE, Dunham MJ, Shendure J, Sonstegard TS, Phillippy AM, Van Tassell CP, Smith TP. Bickhart DM, et al. Among authors: crisa a. Nat Genet. 2017 Apr;49(4):643-650. doi: 10.1038/ng.3802. Epub 2017 Mar 6. Nat Genet. 2017. PMID: 28263316 Free PMC article.
Signatures of selection and environmental adaptation across the goat genome post-domestication.
Bertolini F, Servin B, Talenti A, Rochat E, Kim ES, Oget C, Palhière I, Crisà A, Catillo G, Steri R, Amills M, Colli L, Marras G, Milanesi M, Nicolazzi E, Rosen BD, Van Tassell CP, Guldbrandtsen B, Sonstegard TS, Tosser-Klopp G, Stella A, Rothschild MF, Joost S, Crepaldi P; AdaptMap consortium. Bertolini F, et al. Among authors: crisa a. Genet Sel Evol. 2018 Nov 19;50(1):57. doi: 10.1186/s12711-018-0421-y. Genet Sel Evol. 2018. PMID: 30449276 Free PMC article.
Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes.
Colli L, Milanesi M, Talenti A, Bertolini F, Chen M, Crisà A, Daly KG, Del Corvo M, Guldbrandtsen B, Lenstra JA, Rosen BD, Vajana E, Catillo G, Joost S, Nicolazzi EL, Rochat E, Rothschild MF, Servin B, Sonstegard TS, Steri R, Van Tassell CP, Ajmone-Marsan P, Crepaldi P, Stella A; AdaptMap Consortium. Colli L, et al. Among authors: crisa a. Genet Sel Evol. 2018 Nov 19;50(1):58. doi: 10.1186/s12711-018-0422-x. Genet Sel Evol. 2018. PMID: 30449284 Free PMC article.
AdaptMap: exploring goat diversity and adaptation.
Stella A, Nicolazzi EL, Van Tassell CP, Rothschild MF, Colli L, Rosen BD, Sonstegard TS, Crepaldi P, Tosser-Klopp G, Joost S; AdaptMap Consortium. Stella A, et al. Genet Sel Evol. 2018 Nov 19;50(1):61. doi: 10.1186/s12711-018-0427-5. Genet Sel Evol. 2018. PMID: 30453882 Free PMC article. No abstract available.
VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity.
Denoyelle L, Talouarn E, Bardou P, Colli L, Alberti A, Danchin C, Del Corvo M, Engelen S, Orvain C, Palhière I, Rupp R, Sarry J, Salavati M, Amills M, Clark E, Crepaldi P, Faraut T, Masiga CW, Pompanon F, Rosen BD, Stella A, Van Tassell CP, Tosser-Klopp G; VarGoats Consortium. Denoyelle L, et al. Genet Sel Evol. 2021 Nov 8;53(1):86. doi: 10.1186/s12711-021-00659-6. Genet Sel Evol. 2021. PMID: 34749642 Free PMC article.
Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions.
VarGoats Consortium; Nijman IJ, Rosen BD, Bardou P, Faraut T, Cumer T, Daly KG, Zheng Z, Cai Y, Asadollahpour H, Kul BÇ, Zhang WY, E G, Ayin A, Baird H, Bakhtin M, Bâlteanu VA, Barfield D, Berger B, Blichfeldt T, Boink G, Bugiwati SRA, Cai Z, Carolan S, Clark E, Cubric-Curik V, Dagong MIA, Dorji T, Drew L, Guo J, Hallsson J, Horvat S, Kantanen J, Kawaguchi F, Kazymbet P, Khayatzadeh N, Kim N, Shah MK, Liao Y, Martínez A, Masangkay JS, Masaoka M, Mazza R, McEwan J, Milanesi M, Omar FM, Nomura Y, Ouchene-Khelifi NA, Pereira F, Sahana G, Salavati M, Sasazaki S, Da Silva A, Simčič M, Sölkner J, Sutherland A, Tigchelaar J, Zhang H; Econogene Consortium; Ajmone-Marsan P, Bradley DG, Colli L, Drögemüller C, Jiang Y, Lei C, Mannen H, Pompanon F, Tosser-Klopp G, Lenstra JA. VarGoats Consortium, et al. Mol Ecol. 2022 Aug;31(16):4364-4380. doi: 10.1111/mec.16579. Epub 2022 Jul 12. Mol Ecol. 2022. PMID: 35751552 Free article.
An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants.
Yuan C, Tang L, Lopdell T, Petrov VA, Oget-Ebrad C, Moreira GCM, Gualdrón Duarte JL, Sartelet A, Cheng Z, Salavati M, Wathes DC, Crowe MA; GplusE Consortium; Coppieters W, Littlejohn M, Charlier C, Druet T, Georges M, Takeda H. Yuan C, et al. Genome Res. 2023 Oct;33(10):1848-1864. doi: 10.1101/gr.277947.123. Epub 2023 Sep 26. Genome Res. 2023. PMID: 37751945 Free PMC article.
The climatic and genetic heritage of Italian goat breeds with genomic SNP data.
Cortellari M, Barbato M, Talenti A, Bionda A, Carta A, Ciampolini R, Ciani E, Crisà A, Frattini S, Lasagna E, Marletta D, Mastrangelo S, Negro A, Randi E, Sarti FM, Sartore S, Soglia D, Liotta L, Stella A, Ajmone-Marsan P, Pilla F, Colli L, Crepaldi P. Cortellari M, et al. Among authors: crisa a. Sci Rep. 2021 May 26;11(1):10986. doi: 10.1038/s41598-021-89900-2. Sci Rep. 2021. PMID: 34040003 Free PMC article.
37 results