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Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Suga M, Akita F, Sugahara M, Kubo M, Nakajima Y, Nakane T, Yamashita K, Umena Y, Nakabayashi M, Yamane T, Nakano T, Suzuki M, Masuda T, Inoue S, Kimura T, Nomura T, Yonekura S, Yu LJ, Sakamoto T, Motomura T, Chen JH, Kato Y, Noguchi T, Tono K, Joti Y, Kameshima T, Hatsui T, Nango E, Tanaka R, Naitow H, Matsuura Y, Yamashita A, Yamamoto M, Nureki O, Yabashi M, Ishikawa T, Iwata S, Shen JR. Suga M, et al. Among authors: yamamoto m. Nature. 2017 Mar 2;543(7643):131-135. doi: 10.1038/nature21400. Epub 2017 Feb 20. Nature. 2017. PMID: 28219079 Free article.
High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center.
Sugahara M, Asada Y, Shimizu K, Yamamoto H, Lokanath NK, Mizutani H, Bagautdinov B, Matsuura Y, Taketa M, Kageyama Y, Ono N, Morikawa Y, Tanaka Y, Shimada H, Nakamoto T, Sugahara M, Yamamoto M, Kunishima N. Sugahara M, et al. Among authors: yamamoto h, yamamoto m. J Struct Funct Genomics. 2008 Dec;9(1-4):21-8. doi: 10.1007/s10969-008-9042-y. Epub 2008 Aug 2. J Struct Funct Genomics. 2008. PMID: 18677553
KOTOBUKI-1 apparatus for cryogenic coherent X-ray diffraction imaging.
Nakasako M, Takayama Y, Oroguchi T, Sekiguchi Y, Kobayashi A, Shirahama K, Yamamoto M, Hikima T, Yonekura K, Maki-Yonekura S, Kohmura Y, Inubushi Y, Takahashi Y, Suzuki A, Matsunaga S, Inui Y, Tono K, Kameshima T, Joti Y, Hoshi T. Nakasako M, et al. Among authors: yamamoto m. Rev Sci Instrum. 2013 Sep;84(9):093705. doi: 10.1063/1.4822123. Rev Sci Instrum. 2013. PMID: 24089834
Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Hirata K, Shinzawa-Itoh K, Yano N, Takemura S, Kato K, Hatanaka M, Muramoto K, Kawahara T, Tsukihara T, Yamashita E, Tono K, Ueno G, Hikima T, Murakami H, Inubushi Y, Yabashi M, Ishikawa T, Yamamoto M, Ogura T, Sugimoto H, Shen JR, Yoshikawa S, Ago H. Hirata K, et al. Among authors: yamamoto m. Nat Methods. 2014 Jul;11(7):734-6. doi: 10.1038/nmeth.2962. Epub 2014 May 11. Nat Methods. 2014. PMID: 24813624
Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses.
Xu R, Jiang H, Song C, Rodriguez JA, Huang Z, Chen CC, Nam D, Park J, Gallagher-Jones M, Kim S, Kim S, Suzuki A, Takayama Y, Oroguchi T, Takahashi Y, Fan J, Zou Y, Hatsui T, Inubushi Y, Kameshima T, Yonekura K, Tono K, Togashi T, Sato T, Yamamoto M, Nakasako M, Yabashi M, Ishikawa T, Miao J. Xu R, et al. Among authors: yamamoto m. Nat Commun. 2014 Jun 5;5:4061. doi: 10.1038/ncomms5061. Nat Commun. 2014. PMID: 24898682 Free article.
Crystal structures of the human adiponectin receptors.
Tanabe H, Fujii Y, Okada-Iwabu M, Iwabu M, Nakamura Y, Hosaka T, Motoyama K, Ikeda M, Wakiyama M, Terada T, Ohsawa N, Hato M, Ogasawara S, Hino T, Murata T, Iwata S, Hirata K, Kawano Y, Yamamoto M, Kimura-Someya T, Shirouzu M, Yamauchi T, Kadowaki T, Yokoyama S. Tanabe H, et al. Among authors: yamamoto m. Nature. 2015 Apr 16;520(7547):312-316. doi: 10.1038/nature14301. Epub 2015 Apr 8. Nature. 2015. PMID: 25855295 Free PMC article.
An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Yamashita K, Pan D, Okuda T, Sugahara M, Kodan A, Yamaguchi T, Murai T, Gomi K, Kajiyama N, Mizohata E, Suzuki M, Nango E, Tono K, Joti Y, Kameshima T, Park J, Song C, Hatsui T, Yabashi M, Iwata S, Kato H, Ago H, Yamamoto M, Nakatsu T. Yamashita K, et al. Among authors: yamamoto m. Sci Rep. 2015 Sep 11;5:14017. doi: 10.1038/srep14017. Sci Rep. 2015. PMID: 26360462 Free PMC article.
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