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Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Suga M, Akita F, Sugahara M, Kubo M, Nakajima Y, Nakane T, Yamashita K, Umena Y, Nakabayashi M, Yamane T, Nakano T, Suzuki M, Masuda T, Inoue S, Kimura T, Nomura T, Yonekura S, Yu LJ, Sakamoto T, Motomura T, Chen JH, Kato Y, Noguchi T, Tono K, Joti Y, Kameshima T, Hatsui T, Nango E, Tanaka R, Naitow H, Matsuura Y, Yamashita A, Yamamoto M, Nureki O, Yabashi M, Ishikawa T, Iwata S, Shen JR. Suga M, et al. Among authors: kimura t. Nature. 2017 Mar 2;543(7643):131-135. doi: 10.1038/nature21400. Epub 2017 Feb 20. Nature. 2017. PMID: 28219079 Free article.
A nearly on-axis spectroscopic system for simultaneously measuring UV-visible absorption and X-ray diffraction in the SPring-8 structural genomics beamline.
Sakaguchi M, Kimura T, Nishida T, Tosha T, Sugimoto H, Yamaguchi Y, Yanagisawa S, Ueno G, Murakami H, Ago H, Yamamoto M, Ogura T, Shiro Y, Kubo M. Sakaguchi M, et al. Among authors: kimura t. J Synchrotron Radiat. 2016 Jan;23(1):334-8. doi: 10.1107/S1600577515018275. Epub 2016 Jan 1. J Synchrotron Radiat. 2016. PMID: 26698082 Free PMC article.
Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography.
Nogly P, Panneels V, Nelson G, Gati C, Kimura T, Milne C, Milathianaki D, Kubo M, Wu W, Conrad C, Coe J, Bean R, Zhao Y, Båth P, Dods R, Harimoorthy R, Beyerlein KR, Rheinberger J, James D, DePonte D, Li C, Sala L, Williams GJ, Hunter MS, Koglin JE, Berntsen P, Nango E, Iwata S, Chapman HN, Fromme P, Frank M, Abela R, Boutet S, Barty A, White TA, Weierstall U, Spence J, Neutze R, Schertler G, Standfuss J. Nogly P, et al. Among authors: kimura t. Nat Commun. 2016 Aug 22;7:12314. doi: 10.1038/ncomms12314. Nat Commun. 2016. PMID: 27545823 Free PMC article.
A three-dimensional movie of structural changes in bacteriorhodopsin.
Nango E, Royant A, Kubo M, Nakane T, Wickstrand C, Kimura T, Tanaka T, Tono K, Song C, Tanaka R, Arima T, Yamashita A, Kobayashi J, Hosaka T, Mizohata E, Nogly P, Sugahara M, Nam D, Nomura T, Shimamura T, Im D, Fujiwara T, Yamanaka Y, Jeon B, Nishizawa T, Oda K, Fukuda M, Andersson R, Båth P, Dods R, Davidsson J, Matsuoka S, Kawatake S, Murata M, Nureki O, Owada S, Kameshima T, Hatsui T, Joti Y, Schertler G, Yabashi M, Bondar AN, Standfuss J, Neutze R, Iwata S. Nango E, et al. Among authors: kimura t. Science. 2016 Dec 23;354(6319):1552-1557. doi: 10.1126/science.aah3497. Science. 2016. PMID: 28008064
A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Shimada A, Kubo M, Baba S, Yamashita K, Hirata K, Ueno G, Nomura T, Kimura T, Shinzawa-Itoh K, Baba J, Hatano K, Eto Y, Miyamoto A, Murakami H, Kumasaka T, Owada S, Tono K, Yabashi M, Yamaguchi Y, Yanagisawa S, Sakaguchi M, Ogura T, Komiya R, Yan J, Yamashita E, Yamamoto M, Ago H, Yoshikawa S, Tsukihara T. Shimada A, et al. Among authors: kimura t. Sci Adv. 2017 Jul 14;3(7):e1603042. doi: 10.1126/sciadv.1603042. eCollection 2017 Jul. Sci Adv. 2017. PMID: 28740863 Free PMC article.
Nanosecond pump-probe device for time-resolved serial femtosecond crystallography developed at SACLA.
Kubo M, Nango E, Tono K, Kimura T, Owada S, Song C, Mafuné F, Miyajima K, Takeda Y, Kohno JY, Miyauchi N, Nakane T, Tanaka T, Nomura T, Davidsson J, Tanaka R, Murata M, Kameshima T, Hatsui T, Joti Y, Neutze R, Yabashi M, Iwata S. Kubo M, et al. Among authors: kimura t. J Synchrotron Radiat. 2017 Sep 1;24(Pt 5):1086-1091. doi: 10.1107/S160057751701030X. Epub 2017 Aug 22. J Synchrotron Radiat. 2017. PMID: 28862633 Free PMC article.
Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Tosha T, Nomura T, Nishida T, Saeki N, Okubayashi K, Yamagiwa R, Sugahara M, Nakane T, Yamashita K, Hirata K, Ueno G, Kimura T, Hisano T, Muramoto K, Sawai H, Takeda H, Mizohata E, Yamashita A, Kanematsu Y, Takano Y, Nango E, Tanaka R, Nureki O, Shoji O, Ikemoto Y, Murakami H, Owada S, Tono K, Yabashi M, Yamamoto M, Ago H, Iwata S, Sugimoto H, Shiro Y, Kubo M. Tosha T, et al. Among authors: kimura t. Nat Commun. 2017 Nov 17;8(1):1585. doi: 10.1038/s41467-017-01702-1. Nat Commun. 2017. PMID: 29147002 Free PMC article.
An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Suga M, Akita F, Yamashita K, Nakajima Y, Ueno G, Li H, Yamane T, Hirata K, Umena Y, Yonekura S, Yu LJ, Murakami H, Nomura T, Kimura T, Kubo M, Baba S, Kumasaka T, Tono K, Yabashi M, Isobe H, Yamaguchi K, Yamamoto M, Ago H, Shen JR. Suga M, et al. Among authors: kimura t. Science. 2019 Oct 18;366(6463):334-338. doi: 10.1126/science.aax6998. Epub 2019 Oct 17. Science. 2019. PMID: 31624207 Free article.
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