Xie J - Search Results

1

QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.

Zhang Y, Xie J, Yang J, Fennell A, Zhang C, Ma Q. Zhang Y, et al. Among authors: xie j. Bioinformatics. 2017 Feb 1;33(3):450-452. doi: 10.1093/bioinformatics/btw635. Bioinformatics. 2017. PMID: 28172469

2

RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.

Li Y, Shi X, Liang Y, Xie J, Zhang Y, Ma Q. Li Y, et al. Among authors: xie j. BMC Bioinformatics. 2017 Jan 21;18(1):51. doi: 10.1186/s12859-017-1481-7. BMC Bioinformatics. 2017. PMID: 28109252 Free PMC article.

3

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data.

Xie J, Ma A, Fennell A, Ma Q, Zhao J. Xie J, et al. Brief Bioinform. 2019 Jul 19;20(4):1449-1464. doi: 10.1093/bib/bby014. Brief Bioinform. 2019. PMID: 29490019 Free PMC article. Review.

4

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data.

Xie J, Ma A, Zhang Y, Liu B, Cao S, Wang C, Xu J, Zhang C, Ma Q. Xie J, et al. Bioinformatics. 2020 Feb 15;36(4):1143-1149. doi: 10.1093/bioinformatics/btz692. Bioinformatics. 2020. PMID: 31503285 Free PMC article.

5

[No title available]

[No authors listed] [No authors listed] PMID: 33570128

6

Identification of lncRNAs-gene interactions in transcription regulation based on co-expression analysis of RNA-seq data.

Lu SJ, Xie J, Li Y, Yu B, Ma Q, Liu BQ. Lu SJ, et al. Among authors: xie j. Math Biosci Eng. 2019 Aug 5;16(6):7112-7125. doi: 10.3934/mbe.2019357. Math Biosci Eng. 2019. PMID: 31698606 Free article.

7

A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation.

McDermaid A, Chen X, Zhang Y, Wang C, Gu S, Xie J, Ma Q. McDermaid A, et al. Among authors: xie j. Front Genet. 2018 Aug 14;9:313. doi: 10.3389/fgene.2018.00313. eCollection 2018. Front Genet. 2018. PMID: 30154828 Free PMC article.

8

Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.).

Khadka VS, Vaughn K, Xie J, Swaminathan P, Ma Q, Cramer GR, Fennell AY. Khadka VS, et al. Among authors: xie j. BMC Plant Biol. 2019 Feb 13;19(1):72. doi: 10.1186/s12870-019-1664-7. BMC Plant Biol. 2019. PMID: 30760212 Free PMC article.

9

GmZPR3d Interacts with GmHD-ZIP III Proteins and Regulates Soybean Root and Nodule Vascular Development.

Damodaran S, Dubois A, Xie J, Ma Q, Hindié V, Subramanian S. Damodaran S, et al. Among authors: xie j. Int J Mol Sci. 2019 Feb 14;20(4):827. doi: 10.3390/ijms20040827. Int J Mol Sci. 2019. PMID: 30769886 Free PMC article.

10

P3DOCK: a protein-RNA docking webserver based on template-based and template-free docking.

Zheng J, Hong X, Xie J, Tong X, Liu S. Zheng J, et al. Among authors: xie j. Bioinformatics. 2020 Jan 1;36(1):96-103. doi: 10.1093/bioinformatics/btz478. Bioinformatics. 2020. PMID: 31173056

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