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Groups: knowledge spreadsheets for symbolic biocomputing.
Travers M, Paley SM, Shrager J, Holland TA, Karp PD. Travers M, et al. Among authors: karp pd. Database (Oxford). 2013 Sep 14;2013:bat061. doi: 10.1093/database/bat061. Print 2013. Database (Oxford). 2013. PMID: 24037025 Free PMC article.
Curation accuracy of model organism databases.
Keseler IM, Skrzypek M, Weerasinghe D, Chen AY, Fulcher C, Li GW, Lemmer KC, Mladinich KM, Chow ED, Sherlock G, Karp PD. Keseler IM, et al. Among authors: karp pd. Database (Oxford). 2014 Jun 12;2014:bau058. doi: 10.1093/database/bau058. Print 2014. Database (Oxford). 2014. PMID: 24923819 Free PMC article.
How much does curation cost?
Karp PD. Karp PD. Database (Oxford). 2016 Aug 7;2016:baw110. doi: 10.1093/database/baw110. Print 2016. Database (Oxford). 2016. PMID: 27504008 Free PMC article.
The Pathway Tools software.
Karp PD, Paley S, Romero P. Karp PD, et al. Bioinformatics. 2002;18 Suppl 1:S225-32. doi: 10.1093/bioinformatics/18.suppl_1.s225. Bioinformatics. 2002. PMID: 12169551
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD. Caspi R, et al. Among authors: karp pd. Nucleic Acids Res. 2010 Jan;38(Database issue):D473-9. doi: 10.1093/nar/gkp875. Epub 2009 Oct 22. Nucleic Acids Res. 2010. PMID: 19850718 Free PMC article.
157 results