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Analysis of whole chloroplast genomes from the genera of the Clauseneae, the curry tribe (Rutaceae, Citrus family).
Mol Phylogenet Evol. 2017 Dec;117:135-140. doi: 10.1016/j.ympev.2016.12.015. Epub 2016 Dec 11.
Mol Phylogenet Evol. 2017.
PMID: 27965082
Transcriptome analysis of the curry tree (Bergera koenigii L., Rutaceae) during leaf development.
Shivakumar VS, Johnson G, Zimmer EA.
Shivakumar VS, et al.
Sci Rep. 2019 Mar 12;9(1):4230. doi: 10.1038/s41598-019-40227-z.
Sci Rep. 2019.
PMID: 30862864
Free PMC article.
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Leaf Transcriptome Assembly of Protium copal (Burseraceae) and Annotation of Terpene Biosynthetic Genes.
Damasco G, Shivakumar VS, Misciewicz TM, Daly DC, Fine PVA.
Damasco G, et al. Among authors: shivakumar vs.
Genes (Basel). 2019 May 22;10(5):392. doi: 10.3390/genes10050392.
Genes (Basel). 2019.
PMID: 31121954
Free PMC article.
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Sigmoni: classification of nanopore signal with a compressed pangenome index.
Shivakumar VS, Ahmed OY, Kovaka S, Zakeri M, Langmead B.
Shivakumar VS, et al.
Bioinformatics. 2024 Jun 28;40(Suppl 1):i287-i296. doi: 10.1093/bioinformatics/btae213.
Bioinformatics. 2024.
PMID: 38940135
Free PMC article.
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Sigmoni: classification of nanopore signal with a compressed pangenome index.
Shivakumar VS, Ahmed OY, Kovaka S, Zakeri M, Langmead B.
Shivakumar VS, et al.
bioRxiv [Preprint]. 2023 Aug 30:2023.08.15.553308. doi: 10.1101/2023.08.15.553308.
bioRxiv. 2023.
Update in:
Bioinformatics. 2024 Jun 28;40(Suppl 1):i287-i296. doi: 10.1093/bioinformatics/btae213.
PMID: 37645873
Free PMC article.
Updated.
Preprint.
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