Zelikovsky A - Search Results

1

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.

Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. Artyomenko A, et al. Among authors: zelikovsky a. J Comput Biol. 2017 Jun;24(6):558-570. doi: 10.1089/cmb.2016.0146. Epub 2016 Nov 30. J Comput Biol. 2017. PMID: 27901586 Free PMC article.

2

Scalable heuristics for design of DNA probe arrays.

Kahng AB, Măndoiu II, Pevzner PA, Reda S, Zelikovsky AZ. Kahng AB, et al. Among authors: zelikovsky az. J Comput Biol. 2004;11(2-3):429-47. doi: 10.1089/1066527041410391. J Comput Biol. 2004. PMID: 15285900

3

Design and validation of methods searching for risk factors in genotype case-control studies.

Brinza D, Zelikovsky A. Brinza D, et al. Among authors: zelikovsky a. J Comput Biol. 2008 Jan-Feb;15(1):81-90. doi: 10.1089/cmb.2007.0081. J Comput Biol. 2008. PMID: 18199025

4

2SNP: scalable phasing method for trios and unrelated individuals.

Brinza D, Zelikovsky A. Brinza D, et al. Among authors: zelikovsky a. IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):313-8. doi: 10.1109/TCBB.2007.1068. IEEE/ACM Trans Comput Biol Bioinform. 2008. PMID: 18451440

5

Estimation of alternative splicing isoform frequencies from RNA-Seq data.

Nicolae M, Mangul S, Măndoiu II, Zelikovsky A. Nicolae M, et al. Among authors: zelikovsky a. Algorithms Mol Biol. 2011 Apr 19;6(1):9. doi: 10.1186/1748-7188-6-9. Algorithms Mol Biol. 2011. PMID: 21504602 Free PMC article.

6

Inferring viral quasispecies spectra from 454 pyrosequencing reads.

Astrovskaya I, Tork B, Mangul S, Westbrooks K, Măndoiu I, Balfe P, Zelikovsky A. Astrovskaya I, et al. Among authors: zelikovsky a. BMC Bioinformatics. 2011;12 Suppl 6(Suppl 6):S1. doi: 10.1186/1471-2105-12-S6-S1. Epub 2011 Jul 28. BMC Bioinformatics. 2011. PMID: 21989211 Free PMC article.

7

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.

Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A. Mangul S, et al. Among authors: zelikovsky a. In Silico Biol. 2011-2012;11(5-6):251-61. doi: 10.3233/ISB-2012-0459. In Silico Biol. 2011. PMID: 23202426

8

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.

Skums P, Mancuso N, Artyomenko A, Tork B, Mandoiu I, Khudyakov Y, Zelikovsky A. Skums P, et al. Among authors: zelikovsky a. BMC Bioinformatics. 2013;14 Suppl 9(Suppl 9):S2. doi: 10.1186/1471-2105-14-S9-S2. Epub 2013 Jun 28. BMC Bioinformatics. 2013. PMID: 23902469 Free PMC article.

9

Accurate viral population assembly from ultra-deep sequencing data.

Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. Mangul S, et al. Among authors: zelikovsky a. Bioinformatics. 2014 Jun 15;30(12):i329-37. doi: 10.1093/bioinformatics/btu295. Bioinformatics. 2014. PMID: 24932001 Free PMC article.

10

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data.

Mangul S, Caciula A, Al Seesi S, Brinza D, Mӑndoiu I, Zelikovsky A. Mangul S, et al. Among authors: zelikovsky a. BMC Genomics. 2014;15 Suppl 5(Suppl 5):S7. doi: 10.1186/1471-2164-15-S5-S7. Epub 2014 Jul 14. BMC Genomics. 2014. PMID: 25082147 Free PMC article.

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