Dickerson JA - Search Results

1

The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize.

Walsh JR, Schaeffer ML, Zhang P, Rhee SY, Dickerson JA, Sen TZ. Walsh JR, et al. Among authors: dickerson ja. BMC Syst Biol. 2016 Nov 29;10(1):129. doi: 10.1186/s12918-016-0369-x. BMC Syst Biol. 2016. PMID: 27899149 Free PMC article.

2

A computational platform to maintain and migrate manual functional annotations for BioCyc databases.

Walsh JR, Sen TZ, Dickerson JA. Walsh JR, et al. Among authors: dickerson ja. BMC Syst Biol. 2014 Oct 12;8:115. doi: 10.1186/s12918-014-0115-1. BMC Syst Biol. 2014. PMID: 25304126 Free PMC article.

3

Bioinformatics and its applications in plant biology.

Rhee SY, Dickerson J, Xu D. Rhee SY, et al. Annu Rev Plant Biol. 2006;57:335-60. doi: 10.1146/annurev.arplant.56.032604.144103. Annu Rev Plant Biol. 2006. PMID: 16669765 Review.

4

Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function".

Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, Lee I, Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ. Quanbeck SM, et al. Among authors: dickerson ja. Front Plant Sci. 2012 Feb 10;3:15. doi: 10.3389/fpls.2012.00015. eCollection 2012. Front Plant Sci. 2012. PMID: 22645570 Free PMC article.

5

PlantMetabolomics.org: a web portal for plant metabolomics experiments.

Bais P, Moon SM, He K, Leitao R, Dreher K, Walk T, Sucaet Y, Barkan L, Wohlgemuth G, Roth MR, Wurtele ES, Dixon P, Fiehn O, Lange BM, Shulaev V, Sumner LW, Welti R, Nikolau BJ, Rhee SY, Dickerson JA. Bais P, et al. Among authors: dickerson ja. Plant Physiol. 2010 Apr;152(4):1807-16. doi: 10.1104/pp.109.151027. Epub 2010 Feb 10. Plant Physiol. 2010. PMID: 20147492 Free PMC article.

6

Discriminating response groups in metabolic and regulatory pathway networks.

Van Hemert JL, Dickerson JA. Van Hemert JL, et al. Among authors: dickerson ja. Bioinformatics. 2012 Apr 1;28(7):947-54. doi: 10.1093/bioinformatics/bts039. Epub 2012 Feb 4. Bioinformatics. 2012. PMID: 22308149

7

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems.

Liu R, Loraine AE, Dickerson JA. Liu R, et al. Among authors: dickerson ja. BMC Bioinformatics. 2014 Dec 16;15(1):364. doi: 10.1186/s12859-014-0364-4. BMC Bioinformatics. 2014. PMID: 25511303 Free PMC article.

8

BarleyBase/PLEXdb.

Wise RP, Caldo RA, Hong L, Shen L, Cannon E, Dickerson JA. Wise RP, et al. Among authors: dickerson ja. Methods Mol Biol. 2007;406:347-63. doi: 10.1007/978-1-59745-535-0_17. Methods Mol Biol. 2007. PMID: 18287702

9

Arabidopsis gene co-expression network and its functional modules.

Mao L, Van Hemert JL, Dash S, Dickerson JA. Mao L, et al. Among authors: dickerson ja. BMC Bioinformatics. 2009 Oct 21;10:346. doi: 10.1186/1471-2105-10-346. BMC Bioinformatics. 2009. PMID: 19845953 Free PMC article.

10

MetNetGE: interactive views of biological networks and ontologies.

Jia M, Choi SY, Reiners D, Wurtele ES, Dickerson JA. Jia M, et al. Among authors: dickerson ja. BMC Bioinformatics. 2010 Sep 17;11:469. doi: 10.1186/1471-2105-11-469. BMC Bioinformatics. 2010. PMID: 20849585 Free PMC article.

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