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RNAcentral: a comprehensive database of non-coding RNA sequences.
The RNAcentral Consortium; Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, Lau BY, Williams KP, Chan PP, Lowe TM, Cannone JJ, Gutell R, Machnicka MA, Bujnicki JM, Yoshihama M, Kenmochi N, Chai B, Cole JR, Szymanski M, Karlowski WM, Wood V, Huala E, Berardini TZ, Zhao Y, Chen R, Zhu W, Paraskevopoulou MD, Vlachos IS, Hatzigeorgiou AG, Ma L, Zhang Z, Puetz J, Stadler PF, McDonald D, Basu S, Fey P, Engel SR, Cherry JM, Volders PJ, Mestdagh P, Wower J, Clark MB, Quek XC, Dinger ME. The RNAcentral Consortium, et al. Among authors: hatzigeorgiou ag. Nucleic Acids Res. 2017 Jan 4;45(D1):D128-D134. doi: 10.1093/nar/gkw1008. Epub 2016 Oct 28. Nucleic Acids Res. 2017. PMID: 27794554 Free PMC article.
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.
Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG. Vergoulis T, et al. Among authors: hatzigeorgiou ag. Nucleic Acids Res. 2012 Jan;40(Database issue):D222-9. doi: 10.1093/nar/gkr1161. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22135297 Free PMC article.
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.
Vlachos IS, Kostoulas N, Vergoulis T, Georgakilas G, Reczko M, Maragkakis M, Paraskevopoulou MD, Prionidis K, Dalamagas T, Hatzigeorgiou AG. Vlachos IS, et al. Among authors: hatzigeorgiou ag. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W498-504. doi: 10.1093/nar/gks494. Epub 2012 May 30. Nucleic Acids Res. 2012. PMID: 22649059 Free PMC article.
miRNA regulons associated with synaptic function.
Paschou M, Paraskevopoulou MD, Vlachos IS, Koukouraki P, Hatzigeorgiou AG, Doxakis E. Paschou M, et al. Among authors: hatzigeorgiou ag. PLoS One. 2012;7(10):e46189. doi: 10.1371/journal.pone.0046189. Epub 2012 Oct 8. PLoS One. 2012. PMID: 23071543 Free PMC article.
Online resources for miRNA analysis.
Vlachos IS, Hatzigeorgiou AG. Vlachos IS, et al. Among authors: hatzigeorgiou ag. Clin Biochem. 2013 Jul;46(10-11):879-900. doi: 10.1016/j.clinbiochem.2013.03.006. Epub 2013 Mar 18. Clin Biochem. 2013. PMID: 23518312 Review.
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Vlachos IS, Vergoulis T, Reczko M, Filippidis C, Dalamagas T, Hatzigeorgiou AG. Paraskevopoulou MD, et al. Among authors: hatzigeorgiou ag. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W169-73. doi: 10.1093/nar/gkt393. Epub 2013 May 16. Nucleic Acids Res. 2013. PMID: 23680784 Free PMC article.
RNAcentral: an international database of ncRNA sequences.
RNAcentral Consortium; Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, Lowe TM, Zwieb CW, Wower J, Williams KP, Hudson CM, Gutell R, Clark MB, Dinger M, Quek XC, Bujnicki JM, Chua NH, Liu J, Wang H, Skogerbø G, Zhao Y, Chen R, Zhu W, Cole JR, Chai B, Huang HD, Huang HY, Cherry JM, Hatzigeorgiou A, Pruitt KD. RNAcentral Consortium, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D123-9. doi: 10.1093/nar/gku991. Epub 2014 Oct 28. Nucleic Acids Res. 2015. PMID: 25352543 Free PMC article.
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions.
Vlachos IS, Paraskevopoulou MD, Karagkouni D, Georgakilas G, Vergoulis T, Kanellos I, Anastasopoulos IL, Maniou S, Karathanou K, Kalfakakou D, Fevgas A, Dalamagas T, Hatzigeorgiou AG. Vlachos IS, et al. Among authors: hatzigeorgiou ag. Nucleic Acids Res. 2015 Jan;43(Database issue):D153-9. doi: 10.1093/nar/gku1215. Epub 2014 Nov 21. Nucleic Acids Res. 2015. PMID: 25416803 Free PMC article.
106 results