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VSEARCH: a versatile open source tool for metagenomics.
Rognes T, Flouri T, Nichols B, Quince C, Mahé F. Rognes T, et al. Among authors: mahe f. PeerJ. 2016 Oct 18;4:e2584. doi: 10.7717/peerj.2584. eCollection 2016. PeerJ. 2016. PMID: 27781170 Free PMC article.
Open-Source Sequence Clustering Methods Improve the State Of the Art.
Kopylova E, Navas-Molina JA, Mercier C, Xu ZZ, Mahé F, He Y, Zhou HW, Rognes T, Caporaso JG, Knight R. Kopylova E, et al. Among authors: mahe f. mSystems. 2016 Feb 9;1(1):e00003-15. doi: 10.1128/mSystems.00003-15. eCollection 2016 Jan-Feb. mSystems. 2016. PMID: 27822515 Free PMC article.
Swarm v3: towards tera-scale amplicon clustering.
Mahé F, Czech L, Stamatakis A, Quince C, de Vargas C, Dunthorn M, Rognes T. Mahé F, et al. Bioinformatics. 2021 Dec 22;38(1):267-269. doi: 10.1093/bioinformatics/btab493. Bioinformatics. 2021. PMID: 34244702 Free PMC article.
71 results