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Page 1
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.
Petras D, Nothias LF, Quinn RA, Alexandrov T, Bandeira N, Bouslimani A, Castro-Falcón G, Chen L, Dang T, Floros DJ, Hook V, Garg N, Hoffner N, Jiang Y, Kapono CA, Koester I, Knight R, Leber CA, Ling TJ, Luzzatto-Knaan T, McCall LI, McGrath AP, Meehan MJ, Merritt JK, Mills RH, Morton J, Podvin S, Protsyuk I, Purdy T, Satterfield K, Searles S, Shah S, Shires S, Steffen D, White M, Todoric J, Tuttle R, Wojnicz A, Sapp V, Vargas F, Yang J, Zhang C, Dorrestein PC. Petras D, et al. Among authors: protsyuk i. Anal Chem. 2016 Nov 15;88(22):10775-10784. doi: 10.1021/acs.analchem.6b03456. Epub 2016 Oct 24. Anal Chem. 2016. PMID: 27732780 Free PMC article.
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.
Garg N, Wang M, Hyde E, da Silva RR, Melnik AV, Protsyuk I, Bouslimani A, Lim YW, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, Rohwer F, Conrad DJ, Alexandrov T, Knight R, Dorrestein PC. Garg N, et al. Among authors: protsyuk i. Cell Host Microbe. 2017 Nov 8;22(5):705-716.e4. doi: 10.1016/j.chom.2017.10.001. Epub 2017 Oct 19. Cell Host Microbe. 2017. PMID: 29056429 Free PMC article.
Creating a 3D microbial and chemical snapshot of a human habitat.
Kapono CA, Morton JT, Bouslimani A, Melnik AV, Orlinsky K, Knaan TL, Garg N, Vázquez-Baeza Y, Protsyuk I, Janssen S, Zhu Q, Alexandrov T, Smarr L, Knight R, Dorrestein PC. Kapono CA, et al. Among authors: protsyuk i. Sci Rep. 2018 Feb 27;8(1):3669. doi: 10.1038/s41598-018-21541-4. Sci Rep. 2018. PMID: 29487294 Free PMC article.
Feature-based molecular networking in the GNPS analysis environment.
Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, Cachet X, Caraballo-Rodriguez AM, Da Silva RR, Dang T, Garg N, Gauglitz JM, Gurevich A, Isaac G, Jarmusch AK, Kameník Z, Kang KB, Kessler N, Koester I, Korf A, Le Gouellec A, Ludwig M, Martin H C, McCall LI, McSayles J, Meyer SW, Mohimani H, Morsy M, Moyne O, Neumann S, Neuweger H, Nguyen NH, Nothias-Esposito M, Paolini J, Phelan VV, Pluskal T, Quinn RA, Rogers S, Shrestha B, Tripathi A, van der Hooft JJJ, Vargas F, Weldon KC, Witting M, Yang H, Zhang Z, Zubeil F, Kohlbacher O, Böcker S, Alexandrov T, Bandeira N, Wang M, Dorrestein PC. Nothias LF, et al. Among authors: protsyuk i. Nat Methods. 2020 Sep;17(9):905-908. doi: 10.1038/s41592-020-0933-6. Epub 2020 Aug 24. Nat Methods. 2020. PMID: 32839597 Free PMC article.
Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation.
Nothias LF, Nothias-Esposito M, da Silva R, Wang M, Protsyuk I, Zhang Z, Sarvepalli A, Leyssen P, Touboul D, Costa J, Paolini J, Alexandrov T, Litaudon M, Dorrestein PC. Nothias LF, et al. Among authors: protsyuk i. J Nat Prod. 2018 Apr 27;81(4):758-767. doi: 10.1021/acs.jnatprod.7b00737. Epub 2018 Mar 2. J Nat Prod. 2018. PMID: 29498278
Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.
Melnik AV, Vázquez-Baeza Y, Aksenov AA, Hyde E, McAvoy AC, Wang M, da Silva RR, Protsyuk I, Wu JV, Bouslimani A, Lim YW, Luzzatto-Knaan T, Comstock W, Quinn RA, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, Rohwer F, Conrad DJ, Alexandrov T, Knight R, Dorrestein PC, Garg N. Melnik AV, et al. Among authors: protsyuk i. mSystems. 2019 Sep 24;4(5):e00375-19. doi: 10.1128/mSystems.00375-19. mSystems. 2019. PMID: 31551401 Free PMC article.
Meta-mass shift chemical profiling of metabolomes from coral reefs.
Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL. Hartmann AC, et al. Among authors: protsyuk i. Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11685-11690. doi: 10.1073/pnas.1710248114. Epub 2017 Oct 12. Proc Natl Acad Sci U S A. 2017. PMID: 29078340 Free PMC article.
Use of deep learning to develop continuous-risk models for adverse event prediction from electronic health records.
Tomašev N, Harris N, Baur S, Mottram A, Glorot X, Rae JW, Zielinski M, Askham H, Saraiva A, Magliulo V, Meyer C, Ravuri S, Protsyuk I, Connell A, Hughes CO, Karthikesalingam A, Cornebise J, Montgomery H, Rees G, Laing C, Baker CR, Osborne TF, Reeves R, Hassabis D, King D, Suleyman M, Back T, Nielson C, Seneviratne MG, Ledsam JR, Mohamed S. Tomašev N, et al. Among authors: protsyuk i. Nat Protoc. 2021 Jun;16(6):2765-2787. doi: 10.1038/s41596-021-00513-5. Epub 2021 May 5. Nat Protoc. 2021. PMID: 33953393
13 results