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Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.
Nat Commun. 2016 Sep 26;7:12846. doi: 10.1038/ncomms12846.
Nat Commun. 2016.
PMID: 27667448
Free PMC article.
GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.
Gundersen GW, Jones MR, Rouillard AD, Kou Y, Monteiro CD, Feldmann AS, Hu KS, Ma'ayan A.
Gundersen GW, et al. Among authors: feldmann as.
Bioinformatics. 2015 Sep 15;31(18):3060-2. doi: 10.1093/bioinformatics/btv297. Epub 2015 May 13.
Bioinformatics. 2015.
PMID: 25971742
Free PMC article.
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The characteristic direction: a geometrical approach to identify differentially expressed genes.
Clark NR, Hu KS, Feldmann AS, Kou Y, Chen EY, Duan Q, Ma'ayan A.
Clark NR, et al. Among authors: feldmann as.
BMC Bioinformatics. 2014 Mar 21;15:79. doi: 10.1186/1471-2105-15-79.
BMC Bioinformatics. 2014.
PMID: 24650281
Free PMC article.
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eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.
Clarke DJB, Kuleshov MV, Schilder BM, Torre D, Duffy ME, Keenan AB, Lachmann A, Feldmann AS, Gundersen GW, Silverstein MC, Wang Z, Ma'ayan A.
Clarke DJB, et al. Among authors: feldmann as.
Nucleic Acids Res. 2018 Jul 2;46(W1):W171-W179. doi: 10.1093/nar/gky458.
Nucleic Acids Res. 2018.
PMID: 29800326
Free PMC article.
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