McCue LA - Search Results

1

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.

McClure RS, Overall CC, McDermott JE, Hill EA, Markillie LM, McCue LA, Taylor RC, Ludwig M, Bryant DA, Beliaev AS. McClure RS, et al. Among authors: mccue la. Nucleic Acids Res. 2016 Oct 14;44(18):8810-8825. doi: 10.1093/nar/gkw737. Epub 2016 Aug 27. Nucleic Acids Res. 2016. PMID: 27568004 Free PMC article.

2

A Bayesian integration model of high-throughput proteomics and metabolomics data for improved early detection of microbial infections.

Webb-Robertson BJ, McCue LA, Beagley N, McDermott JE, Wunschel DS, Varnum SM, Hu JZ, Isern NG, Buchko GW, Mcateer K, Pounds JG, Skerrett SJ, Liggitt D, Frevert CW. Webb-Robertson BJ, et al. Among authors: mccue la. Pac Symp Biocomput. 2009:451-63. Pac Symp Biocomput. 2009. PMID: 19209722 Free PMC article.

3

A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142.

McDermott JE, Oehmen CS, McCue LA, Hill E, Choi DM, Stöckel J, Liberton M, Pakrasi HB, Sherman LA. McDermott JE, et al. Among authors: mccue la. Mol Biosyst. 2011 Aug;7(8):2407-18. doi: 10.1039/c1mb05006k. Epub 2011 Jun 23. Mol Biosyst. 2011. PMID: 21698331

4

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes.

McCue L, Thompson W, Carmack C, Ryan MP, Liu JS, Derbyshire V, Lawrence CE. McCue L, et al. Nucleic Acids Res. 2001 Feb 1;29(3):774-82. doi: 10.1093/nar/29.3.774. Nucleic Acids Res. 2001. PMID: 11160901 Free PMC article.

5

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data.

Peterson ES, McCue LA, Schrimpe-Rutledge AC, Jensen JL, Walker H, Kobold MA, Webb SR, Payne SH, Ansong C, Adkins JN, Cannon WR, Webb-Robertson BJ. Peterson ES, et al. Among authors: mccue la. BMC Genomics. 2012 Apr 5;13:131. doi: 10.1186/1471-2164-13-131. BMC Genomics. 2012. PMID: 22480257 Free PMC article.

6

Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece.

Aryal UK, Callister SJ, McMahon BH, McCue LA, Brown J, Stöckel J, Liberton M, Mishra S, Zhang X, Nicora CD, Angel TE, Koppenaal DW, Smith RD, Pakrasi HB, Sherman LA. Aryal UK, et al. Among authors: mccue la. J Proteome Res. 2014 Jul 3;13(7):3262-76. doi: 10.1021/pr5000889. Epub 2014 Jun 4. J Proteome Res. 2014. PMID: 24846609

7

Comparative bacterial proteomics: analysis of the core genome concept.

Callister SJ, McCue LA, Turse JE, Monroe ME, Auberry KJ, Smith RD, Adkins JN, Lipton MS. Callister SJ, et al. Among authors: mccue la. PLoS One. 2008 Feb 6;3(2):e1542. doi: 10.1371/journal.pone.0001542. PLoS One. 2008. PMID: 18253490 Free PMC article.

8

Using the Gibbs Motif Sampler for phylogenetic footprinting.

Thompson W, Conlan S, McCue LA, Lawrence CE. Thompson W, et al. Among authors: mccue la. Methods Mol Biol. 2007;395:403-24. doi: 10.1007/978-1-59745-514-5_25. Methods Mol Biol. 2007. PMID: 17993688

9

Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.

Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield JF, Long PE, Lipton MS. Wilkins MJ, et al. Among authors: mccue la. PLoS One. 2013;8(3):e57819. doi: 10.1371/journal.pone.0057819. Epub 2013 Mar 5. PLoS One. 2013. PMID: 23472107 Free PMC article.

10

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.

Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA 3rd, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, Song HS, Jansson JK. Roy Chowdhury T, et al. Among authors: mccue la. mSystems. 2019 Jun 11;4(4):e00061-19. doi: 10.1128/mSystems.00061-19. mSystems. 2019. PMID: 31186334 Free PMC article.

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