Liu Z - Search Results

1

TargetM6A: Identifying N⁶-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine.

Li GQ, Liu Z, Shen HB, Yu DJ. Li GQ, et al. Among authors: liu z. IEEE Trans Nanobioscience. 2016 Oct;15(7):674-682. doi: 10.1109/TNB.2016.2599115. Epub 2016 Aug 10. IEEE Trans Nanobioscience. 2016. PMID: 27552763

2

pRNAm-PC: Predicting N(6)-methyladenosine sites in RNA sequences via physical-chemical properties.

Liu Z, Xiao X, Yu DJ, Jia J, Qiu WR, Chou KC. Liu Z, et al. Anal Biochem. 2016 Mar 15;497:60-7. doi: 10.1016/j.ab.2015.12.017. Epub 2015 Dec 31. Anal Biochem. 2016. PMID: 26748145

3

Improving N(6)-methyladenosine site prediction with heuristic selection of nucleotide physical-chemical properties.

Zhang M, Sun JW, Liu Z, Ren MW, Shen HB, Yu DJ. Zhang M, et al. Among authors: liu z. Anal Biochem. 2016 Sep 1;508:104-13. doi: 10.1016/j.ab.2016.06.001. Epub 2016 Jun 11. Anal Biochem. 2016. PMID: 27293216

4

LS-align: an atom-level, flexible ligand structural alignment algorithm for high-throughput virtual screening.

Hu J, Liu Z, Yu DJ, Zhang Y. Hu J, et al. Among authors: liu z. Bioinformatics. 2018 Jul 1;34(13):2209-2218. doi: 10.1093/bioinformatics/bty081. Bioinformatics. 2018. PMID: 29462237 Free PMC article.

5

Accurate RNA 5-methylcytosine site prediction based on heuristic physical-chemical properties reduction and classifier ensemble.

Zhang M, Xu Y, Li L, Liu Z, Yang X, Yu DJ. Zhang M, et al. Among authors: liu z. Anal Biochem. 2018 Jun 1;550:41-48. doi: 10.1016/j.ab.2018.03.027. Epub 2018 Apr 9. Anal Biochem. 2018. PMID: 29649472

6

cpxDeepMSA: A Deep Cascade Algorithm for Constructing Multiple Sequence Alignments of Protein-Protein Interactions.

Liu Z, Yu DJ. Liu Z, et al. Int J Mol Sci. 2022 Jul 30;23(15):8459. doi: 10.3390/ijms23158459. Int J Mol Sci. 2022. PMID: 35955594 Free PMC article.

7

Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction.

Liu Z, Zhu YH, Shen LC, Xiao X, Qiu WR, Yu DJ. Liu Z, et al. Comput Biol Med. 2023 Nov;166:107529. doi: 10.1016/j.compbiomed.2023.107529. Epub 2023 Sep 20. Comput Biol Med. 2023. PMID: 37748220 Free article.

8

TM-search: An Efficient and Effective Tool for Protein Structure Database Search.

Liu Z, Zhang C, Zhang Q, Zhang Y, Yu DJ. Liu Z, et al. J Chem Inf Model. 2024 Feb 12;64(3):1043-1049. doi: 10.1021/acs.jcim.3c01455. Epub 2024 Jan 25. J Chem Inf Model. 2024. PMID: 38270339

9

ULDNA: integrating unsupervised multi-source language models with LSTM-attention network for high-accuracy protein-DNA binding site prediction.

Zhu YH, Liu Z, Liu Y, Ji Z, Yu DJ. Zhu YH, et al. Among authors: liu z, liu y. Brief Bioinform. 2024 Jan 22;25(2):bbae040. doi: 10.1093/bib/bbae040. Brief Bioinform. 2024. PMID: 38349057 Free PMC article.

10

iDNA-Methyl: identifying DNA methylation sites via pseudo trinucleotide composition.

Liu Z, Xiao X, Qiu WR, Chou KC. Liu Z, et al. Anal Biochem. 2015 Apr 1;474:69-77. doi: 10.1016/j.ab.2014.12.009. Epub 2015 Jan 14. Anal Biochem. 2015. PMID: 25596338

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