Casadio R - Search Results

1

Ancient pathogen-driven adaptation triggers increased susceptibility to non-celiac wheat sensitivity in present-day European populations.

Sazzini M, De Fanti S, Cherubini A, Quagliariello A, Profiti G, Martelli PL, Casadio R, Ricci C, Campieri M, Lanzini A, Volta U, Caio G, Franceschi C, Spisni E, Luiselli D. Sazzini M, et al. Among authors: casadio r. Genes Nutr. 2016 May 23;11:15. doi: 10.1186/s12263-016-0532-4. eCollection 2016. Genes Nutr. 2016. PMID: 27551316 Free PMC article.

2

A data base of minimally frustrated alpha helical segments extracted from proteins according to an entropy criterion.

Casadio R, Compiani M, Fariselli P, Martelli PL. Casadio R, et al. Proc Int Conf Intell Syst Mol Biol. 1999:68-76. Proc Int Conf Intell Syst Mol Biol. 1999. PMID: 10786288

3

Predictions of protein segments with the same aminoacid sequence and different secondary structure: a benchmark for predictive methods.

Jacoboni I, Martelli PL, Fariselli P, Compiani M, Casadio R. Jacoboni I, et al. Among authors: casadio r. Proteins. 2000 Dec 1;41(4):535-44. doi: 10.1002/1097-0134(20001201)41:4<535::aid-prot100>3.0.co;2-c. Proteins. 2000. PMID: 11056040

4

Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor.

Jacoboni I, Martelli PL, Fariselli P, De Pinto V, Casadio R. Jacoboni I, et al. Among authors: casadio r. Protein Sci. 2001 Apr;10(4):779-87. doi: 10.1110/ps.37201. Protein Sci. 2001. PMID: 11274469 Free PMC article.

5

A low-resolution 3D model of the tetrameric alcohol dehydrogenase from Sulfolobus solfataricus.

Casadio R, Martelli PL, Giordano A, Rossi M, Raia CA. Casadio R, et al. Protein Eng. 2002 Mar;15(3):215-23. doi: 10.1093/protein/15.3.215. Protein Eng. 2002. PMID: 11932492

6

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins.

Martelli PL, Fariselli P, Krogh A, Casadio R. Martelli PL, et al. Among authors: casadio r. Bioinformatics. 2002;18 Suppl 1:S46-53. doi: 10.1093/bioinformatics/18.suppl_1.s46. Bioinformatics. 2002. PMID: 12169530

7

Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy.

Martelli PL, Fariselli P, Malaguti L, Casadio R. Martelli PL, et al. Among authors: casadio r. Protein Sci. 2002 Nov;11(11):2735-9. doi: 10.1110/ps.0219602. Protein Sci. 2002. Retraction in: Protein Sci. 2003 Jul;12(7):1578. doi: 10.1110/ps.0219602 PMID: 12381855 Free PMC article. Retracted.

8

Prediction of the disulfide bonding state of cysteines in proteins with hidden neural networks.

Martelli PL, Fariselli P, Malaguti L, Casadio R. Martelli PL, et al. Among authors: casadio r. Protein Eng. 2002 Dec;15(12):951-3. doi: 10.1093/protein/15.12.951. Protein Eng. 2002. PMID: 12601133

9

MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments.

Fariselli P, Finelli M, Marchignoli D, Martelli PL, Rossi I, Casadio R. Fariselli P, et al. Among authors: casadio r. Bioinformatics. 2003 Mar 1;19(4):500-5. doi: 10.1093/bioinformatics/btg023. Bioinformatics. 2003. PMID: 12611805

10

Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria.

Casadio R, Fariselli P, Finocchiaro G, Martelli PL. Casadio R, et al. Protein Sci. 2003 Jun;12(6):1158-68. doi: 10.1110/ps.0223603. Protein Sci. 2003. PMID: 12761386 Free PMC article.

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